Workflows

Discovery workflow with SG/PS and MaxQuant to generate microbial peptides

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 2: Discovery, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Quantification using the MaxQuant tool

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 4: Quantitation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Interpreting MaxQuant data using MSstats involves applying a rigorous statistical framework to glean meaningful insights from quantitative proteomic datasets

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 5: Data Interpretation, available in the GTN

Thanks to...

Workflow Author(s): ...

WF3- Peptide verification/validaiton workflow

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 3: Verification, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Subset data on the Mediterreanean see and extract and visualise the Phosphate variable

Associated Tutorial

This workflows is part of the tutorial Ocean's variables study, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy ...

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteiomics 1: Database-Generation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): [Subina ...

Calculating diversity from bracken output

Associated Tutorial

This workflows is part of the tutorial Calculating α and β diversity from microbiome taxonomic data, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...