Workflows
What is a Workflow?Filters
Assembly and intrahost/low-frequency variant calling for viral samples
Type: Nextflow
Creators: Patel H, Sarai Varona and Sara Monzon, Varona S and Monzon S
Submitter: WorkflowHub Sandbox Bot
Spatial Transcriptomics
Type: Nextflow
Creators: Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava
Submitter: WorkflowHub Sandbox Bot
Small RNA-Seq Best Practice Analysis Pipeline.
Type: Nextflow
Creators: P. Ewels, Phil Ewels <phil.ewels@scilifelab.se>, P. Ewels <phil.ewels@scilifelab.se>, C. Wang, Chuan Wang <chuan.wang@scilifelab.se>, C. Wang <chuan.wang@scilifelab.se>, R. Hammarén, Rickard Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén <rickard.hammaren@scilifelab.se>, L. Pantano, Lorena Pantano <lorena.pantano@gmail.com>, L. Pantano <lorena.pantano@gmail.com>, A. Peltzer
Submitter: WorkflowHub Sandbox Bot
Pipeline for processing of 10xGenomics single cell rnaseq data
Type: Nextflow
Creators: Bailey PJ, Peter J Bailey, Botvinnik O, Alexander Peltzer, Marques de Almeida F, Olga Botvinnik, Peltzer A, Sturm G
Submitter: WorkflowHub Sandbox Bot
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
Assembly, binning and annotation of metagenomes
Type: Nextflow
Creators: Hadrien Gourlé, No author provided, Daniel Straub, Sabrina Krakau
Submitter: WorkflowHub Sandbox Bot
fgbio Best Practices FASTQ to Consensus Pipeline
