Workflow of Tutorial "Single-cell ATAC-seq standard processing with SnapATAC2". This workflow takes a fragment file as input and performs the standard steps of scATAC-seq analysis: filtering, dimension reduction, embedding and visualization of marker genes with SnapATAC2. In an alternative step, the fragment file can also be generated from a BAM file.

Associated Tutorial

This workflows is part of the tutorial [Single-cell ATAC-seq standard processing with ...

Hi-C analysis of Drosophila melanogaster cells using HiCExplorer

Associated Tutorial

This workflows is part of the tutorial Galaxy Workflow Galaxy Hi C, available in the GTN

Thanks to...

Tutorial Author(s): Joachim Wolff, [Fidel ...

Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

Associated Tutorial

This workflows is part of the tutorial Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1), available in the GTN

Features

• Includes [Galaxy Workflow ...

atac-seq

Associated Tutorial

This workflows is part of the tutorial ATAC-seq GTM, available in the GTN

Thanks to...

Tutorial Author(s): Lucille Delisle, Maria Doyle, [Florian ...

The workflow containes the step to perpare the data for and run Galaxy Infinium Human Methylation BeadChip tool that represents many popular algorithms for detecting somatic genetic alterations from genome and exome data

Associated Tutorial

This workflows is part of the tutorial Infinium Human Methylation BeadChip, available in the GTN

Features

...

atac-seq

Associated Tutorial

This workflows is part of the tutorial ATAC-seq GTM, available in the GTN

Thanks to...

Tutorial Author(s): Florian Heyl

Tutorial Contributor(s): Helena Rasche, ...

DNA Methylation data analysis

Associated Tutorial

This workflows is part of the tutorial Workflow Methylation Seq, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Joachim ...

Associated Tutorial

This workflows is part of the tutorial GTN - ChIP Seq - Formation Of Super Structures On Xi, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Friederike ...

Identification of the binding sites of the Estrogen receptor

Associated Tutorial

This workflows is part of the tutorial Identification Of The Binding Sites Of The Estrogen Receptor - Qc Mapping, available in the GTN

Thanks to...

Tutorial Author(s): Friederike Dündar, ...

Identification of the binding sites of the Estrogen receptor

Associated Tutorial

This workflows is part of the tutorial Identification Of The Binding Sites Of The Estrogen Receptor - Chip Seq, available in the GTN

Thanks to...

Tutorial Author(s): Friederike Dündar, ...