Downstream Single-cell RNA Plant analysis with ScanPy

Associated Tutorial

This workflows is part of the tutorial Analysis of plant scRNA-Seq Data with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Downstream Single-cell RNA analysis with RaceID

Associated Tutorial

This workflows is part of the tutorial Downstream Single-cell RNA analysis with RaceID, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Visualization of RNA-Seq results with Volcano Plot

Associated Tutorial

This workflows is part of the tutorial Visualization Of RNA-Seq Results With Volcano Plot, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks

...

Small Non-coding RNA Clustering using BlockClust

Associated Tutorial

This workflows is part of the tutorial Blockclust 1.1.0 Clustering, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Bérénice Batut, ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial DEG Part - Ref Based RNA Seq - Transcriptomics - GTN, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses ...

RNA-seq counts to genes

Associated Tutorial

This workflows is part of the tutorial RNA Seq Counts To Genes, available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Belinda Phipson, ...

De novo transcriptome reconstruction with RNA-Seq

Associated Tutorial

This workflows is part of the tutorial De novo transcriptome reconstruction with RNA-Seq, available in the GTN

Thanks to...

Tutorial Author(s): Mallory Freeberg, [Mo ...

Identify upregulated miRNAS and analyze potential targets in downregulated genes.

Associated Tutorial

This workflows is part of the tutorial Plant bulk RNA-Seq workflow, available in the GTN

Thanks to...

Tutorial Author(s): Cristóbal Gallardo, ...

RNA-seq genes to pathways

Associated Tutorial

This workflows is part of the tutorial RNA Seq Genes To Pathways (imported from uploaded file), available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, [Belinda ...

GO Enrichment Analysis Tutorial

Associated Tutorial

This workflows is part of the tutorial GO Enrichment Workflow, available in the GTN

Thanks to...

Tutorial Author(s): IGC Bioinformatics Unit, Maria Doyle ...

Visualization of RNA-Seq results with heatmap2

Associated Tutorial

This workflows is part of the tutorial Heatmap2 Workflow, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Maria ...

roscoff hackathon

Associated Tutorial

This workflows is part of the tutorial trinity NG, available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Gildas Le Corguillé, ...

Network analysis with Heinz

Associated Tutorial

This workflows is part of the tutorial Workflow Constructed From History 'Heinz Workflow Trial Sep 11', available in the GTN

Thanks to...

Tutorial Author(s): Chao Zhang

[![gtn star logo ...

rna-seq-reads-to-counts

Associated Tutorial

This workflows is part of the tutorial QC report, available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Belinda Phipson, ...

RNA-Seq reads to counts

Associated Tutorial

This workflows is part of the tutorial RNA Seq Reads To Counts, available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Belinda Phipson, ...

RNA-RNA interactome analysis using ChiRA tool suite

Associated Tutorial

This workflows is part of the tutorial RNA-RNA interactome data analysis - chira v1.4.3, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

**Tutorial ...

CLIP-Seq data analysis from pre-processing to motif detection

Associated Tutorial

This workflows is part of the tutorial Tutorial CLIPseq Explorer Demultiplexed PEAKachu eCLIP Hg38 , available in the GTN

Thanks to...

Tutorial Author(s): Florian Heyl, [Daniel ...

This workflow completes the first part of the small RNA-seq tutorial from read pre-processing to trimming.e

Associated Tutorial

This workflows is part of the tutorial sRNA Seq Step 1: Read Pre Processing And Removal Of Artifacts (no Grooming), available in the GTN

Thanks to...

Tutorial Author(s): [Mallory ...

This workflow completes the second part of the sRNA-seq tutorial from transcript quantification through differential abundance testing.

Associated Tutorial

This workflows is part of the tutorial sRNA Seq Step 2: Salmon And DESeq2, available in the GTN

Thanks to...

Tutorial Author(s): Mallory Freeberg ...

Downstream Single-cell RNA Plant analysis with ScanPy

Associated Tutorial

This workflows is part of the tutorial scRNA Plant Analysis, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Beatriz Serrano-Solano, ...

Associated Tutorial

This workflows is part of the tutorial Cell Cycle Regression Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Marisa Loach

Tutorial Contributor(s): Wendi Bacon, ...

Single-cell quality control with scater

Associated Tutorial

This workflows is part of the tutorial Scater, available in the GTN

Thanks to...

Tutorial Author(s): Graham Etherington, Nicola Soranzo ...

Bulk RNA Deconvolution with MuSiC

Associated Tutorial

This workflows is part of the tutorial MuSiC Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Wendi Bacon ...

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell RNA Datasets, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Pre-processing of Single-Cell RNA Data

Associated Tutorial

This workflows is part of the tutorial CelSeq2: Multi Batch (mm10), available in the GTN

Features

• Uses subworkflows

Thanks to...

Tutorial Author(s): [Mehmet ...

Pre-processing of Single-Cell RNA Data

Associated Tutorial

This workflows is part of the tutorial CelSeq2: Single Batch (mm10), available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Bérénice Batut, ...

Filter, Plot and Explore Single-cell RNA-seq Data

Associated Tutorial

This workflows is part of the tutorial Filter, Plot and Explore Single-cell RNA-seq Data updated, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks

...

Downstream Single-cell RNA analysis with RaceID

Associated Tutorial

This workflows is part of the tutorial RaceID Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Alex Ostrovsky ...

An analysis pipeline for Molecular Cartography data from Resolve Biosciences.

Spatial Transcriptomics

Galaxy workflow

Galaxy workflow

Galaxy workflow

Galaxy workflow