2 items tagged with 'chromatin-accessibiity'.
ATACSeq peak-calling and differential analysis pipeline.
Type: Nextflow
Creators: Patel H, Harshil Patel, Langer B, Espinosa-Carrasco J, Syme R
Submitter: WorkflowHub Sandbox Bot
Introduction
nfcore/atacseq is a bioinformatics analysis pipeline used for ATAC-seq data.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
Pipeline summary
Raw read QC (FastQC) Adapter trimming (Trim Galore!) Alignment (BWA) Mark duplicates (picard) Merge alignments from multiple libraries of the same sample (picard) ...
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