TranscriptsAnnotation-i5only-wf

Original URL: https://github.com/EBI-Metagenomics/workflow-is-cwl/blob/master/workflows/TranscriptsAnnotation-i5only-wf.cwl

Transcripts annotation workflow

Author
Arnaud Meng, Maxim Scheremetjew, Michael Crusoe
Publisher
EMBL - European Bioinformatics Institute, 2018
License
https://www.apache.org/licenses/LICENSE-2.0

Contents

Main Workflow: TranscriptsAnnotation-i5only-wf
Size: 5490 bytes
Main Workflow Diagram: diagram.svg
Size: 34556 bytes
workflows/TransDecoder-v5-wf-2steps.cwl
Size: 1547 bytes
tools/TransDecoder/TransDecoder.Predict-v5.cwl
Size: 5722 bytes
tools/TransDecoder/TransDecoder-v5-genetic_codes.yaml
Size: 415 bytes
tools/TransDecoder/TransDecoder.LongOrfs-v5.cwl
Size: 3920 bytes
workflows/InterProScan-v5-chunked-wf.cwl
Size: 2940 bytes
tools/InterProScan/InterProScan-v5.cwl
Size: 4556 bytes
tools/InterProScan/InterProScan-apps.yaml
Size: 283 bytes
tools/InterProScan/InterProScan-protein_formats.yaml
Size: 78 bytes
utils/fasta_chunker.cwl
Size: 2178 bytes
utils/concatenate.cwl
Size: 1217 bytes
utils/clean_fasta_headers.cwl
Size: 928 bytes
tools/Diamond/Diamon.blastx-v0.9.21.cwl
Size: 4441 bytes
tools/Diamond/Diamond-strand_values.yaml
Size: 54 bytes
tools/Diamond/Diamond-output_formats.yaml
Size: 79 bytes
utils/esl-reformat.cwl
Size: 1408 bytes
utils/esl-reformat-replace.yaml
Size: 381 bytes
utils/cut_fasta_headers.cwl
Size: 970 bytes
tools/BUSCO/BUSCO-assessment_modes.yaml
Size: 63 bytes
workflows/cmsearch-multimodel-wf.cwl
Size: 1892 bytes
tools/cmsearch-deoverlap/cmsearch-deoverlap-v0.02.cwl
Size: 1925 bytes
tools/Infernal/cmsearch/infernal-cmsearch-v1.1.2.cwl
Size: 4376 bytes
tools/BUSCO/BUSCO-v3.cwl
Size: 9661 bytes