4_ Variation

Original URL: https://github.com/galaxyproject/SARS-CoV-2/blob/master/genomics/deploy/workflows/4-Variation.ga

Contents

Main Workflow: 4_ Variation
Size: 21389 bytes

all_covid_tools.yaml

variation_analysis.ipynb

SRR11241255.vcf.gz

current.txt

SRR11278092.vcf.gz

SRR11140746.vcf.gz

current_metadata.txt

SRR11278167.vcf.gz

var_map.png

SRR11177792.vcf.gz

SRR11241254.vcf.gz

SRR11278168.vcf.gz

SRR11059942.vcf.gz

SRR11059944.vcf.gz

genbank.txt

acc2exclude.txt

var_wf_pe.png

cdc_primers.txt

SRR11140750.vcf.gz

igv_snapshot.png

SRR11247078.vcf.gz

SRR11278091.vcf.gz

requirements.txt

SRR11059947.vcf.gz

SRR11140744.vcf.gz

SRR11278090.vcf.gz

SRR11278165.vcf.gz

SRR10903402.vcf.gz

union.txt

sra.txt

SRR11059941.vcf.gz

SRR11247077.vcf.gz

SRR11059943.vcf.gz

var_wf_se.png

README.md

fetch_sra_acc.sh

current_gridion.txt

Main Workflow Diagram: var_wf.png
Size: 295038 bytes

SRR11059940.vcf.gz

SRR11314339.vcf.gz

SRR11059946.vcf.gz

variant_list.tsv

SRR11140748.vcf.gz

SRR10903401.vcf.gz

S_var.png

current_illumina.txt

SRR11278164.vcf.gz

SRR11247076.vcf.gz

SRR11059945.vcf.gz

SRR10971381.vcf.gz

SRR11278166.vcf.gz

ncbi.txt

SRR11247075.vcf.gz