Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Shell Script1
Tag
cancer1
Gadi1
GATK41
INDELs1
Mutect21
NCI1
NCI Gadi1
NCI-Gadi1
scalable1
SNPs1
Somatic1
tumour1
variant_calling1
VCF1
More...
Submitter
Rosemarie Sadsad1
Space
Australian BioCommons1
Topic annotations
Biomedical science1
Genetic variation4
Whole genome sequencing4
Transcriptomics3
Gene transcripts2
Genomics2
Population genomics2
Bioinformatics1
DNA mutation1
DNA packaging1
DNA polymorphism1
Gene expression1
Metagenomic sequencing1
Metagenomics1
Sequence assembly1
More...
Operation annotations
Biomedical science1
Maturity
Work-in-progress1
1
Workflow matching the given criteria:
(Clear all filters)
Creator:
Rosemarie Sadsad1
Topic annotations:
Biomedical science1
Work-in-progress
Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel. ...
Download
