Workflows
What is a Workflow?Filters
CLAWS (CNAG's Long-read Assembly Workflow in Snakemake)
Snakemake Pipeline used for de novo genome assembly @CNAG. It has been developed for Snakemake v6.0.5.
It accepts Oxford Nanopore Technologies (ONT) reads, PacBio HFi reads, illumina paired-end data, illumina 10X data and Hi-C reads. It does the preprocessing of the reads, assembly, polishing, purge_dups, scaffolding, different evaluation steps and generation of pretext files for curation. Default behavior is to preprocess the reads, ...
Type: Snakemake
Creators: Jessica Gomez-Garrido, Francisco Camara Ferreira, Fernando Cruz, Tyler Alioto
Submitter: Jessica Gomez-Garrido
CLAWS (CNAG's Long-read Assembly Workflow in Snakemake)
Snakemake Pipeline used for de novo genome assembly @CNAG. It has been developed for Snakemake v6.0.5.
It accepts Oxford Nanopore Technologies (ONT) reads, PacBio HFi reads, illumina paired-end data, illumina 10X data and Hi-C reads. It does the preprocessing of the reads, assembly, polishing, purge_dups, scaffodling and different evaluation steps. By default it will preprocess the reads, run Flye + Hypo + purge_dups + yahs and evaluate ...
Type: Snakemake
Creators: Jessica Gomez-Garrido, Fernando Cruz (CNAG), Francisco Camara (CNAG), Tyler Alioto (CNAG)
Submitter: Jessica Gomez-Garrido
