Workflows

What is a Workflow?

1 Workflow matching the given criteria: (Clear all filters)

Tool:

Generic variation analysis on WGS PE data

usegalaxy-eu

Stable

Generic variant calling

A generic workflow for identification of variants in a haploid genome such as genomes of bacteria or viruses. It can be readily used on MonkeyPox. The workflow accepts two inputs:

A genbank file with the reference genomes
A collection of paired fastqsanger files

The workflow outputs a collection of VCF files for each sample (each fastq pair). These VCF files serve as input to the Reporting workflow.

Workflow can be accessed ...

Type: Galaxy

Creator: Wolfgang Maier

Submitter: Anton Nekrutenko

Created: 1st Jun 2022 at 13:46, Last updated: 1st Jun 2022 at 16:51

Workflows

Filters ×

Generic variant calling

Filters