Workflows

fastp14 Minimap210 BCFtools9 SAMtools8 FastQC7 MaBoSS7 MultiQC7 PhysiCell7 BLAST6 Galaxy6 kraken26 shovill6 vardict6 Bowtie 25 BUSCO5 BWA5 Scipion5 SPAdes5 FASTX-Toolkit4 Flye4 R4 SemiBin4 Seurat4 taxonomy_krona_chart4 Bwa-mem23 cisTEM3 Konstanz Information Miner (KNIME)3 MAFFT3 MetaBAT 23 MotionCor23 ABRicate2 AdapterRemoval2 AutoDock2 AutoDock Vina2 Bakta2 BBMap2 Binette2 CellProfiler2 CheckM2 CheckM22 clusterProfiler2 CoverM2 DESeq22 eggNOG-mapper v22 Filtlong2 FLASH2 FreeBayes2 Hostile2 humann2 iqtree2 MACS2 MaxBin2 MetaPhlAn2 MMseqs22 NanoPlot2 nanopolish2 NGSUtils2 OmicFlow2 P2Rank2 picard_samtofastq2 PredPrIn2 QUAST2 RDKit2 scikit-image2 Scipion-chem2 seqkit2 seqtk2 Sequali2 Snakemake2 STAR2 Trimmomatic2 Unicycler2 VADR2 vcfutils2 XMIPP2 AGAT1 Alevin1 AMRFinderPlus1 AnnotSV1 antiSMASH1 ANTsX1 ARGprofiler1 AutoSite1 Bandage1 BBTools1 Bioconductor1 Biopython1 BlobToolKit1 BRAKER11 CARNIVAL1 CAT and BAT1 CellChat1 Clair31 CNVkit1 COMBAT-TB Workbench1 CONCOCT1 Cutadapt1 dada21 dastool1 decoupleR1 Delly21 dRep1 eggNOG1 fastplong1 FastQ Screen1 FastTree1 Fpocket1 funannotate1 GADES1 Galaxy Image Analysis1 GATK1 gblocks1 GBMatch - GBMPredictor1 geNomad1 GenomeScope 2.01 GetOrganelle1 gffread1 ggtree1 GROOT1 GSEA1 GTDB1 GTDB-Tk1 hAMRonization1 Hifiasm1 htseqcount1 ImageJ21 Infernal1 InterProScan (EBI)1 kallisto1 KARGA1 KMA1 KofamKOALA1 kofamscan1 Liftoff1 Mash1 Medaka1 MEGAHIT1 Merqury1 Meryl1 metabuli1 MetaCoAG1 Mikado1 MitoHiFi1 MITOS1 MOB-suite1 MolMeDB1 NextPolish1 nf-core-rnaseq1 ngsReports1 OBITools1 OMERO1 PathoFact21 pathview1 PEAR1 PhysiBoSS1 pilon1 PLINK1 Prodigal1 progeny1 Prokka1 protexcluder1 purge_dups1 QIIME 21 QualiMap1 Racon1 RepeatMasker1 RepeatModeler1 SeqSero21 SISTR1 snippy1 snpEff1 srst21 staramr1 StringTie1 strobealign1 TaxonKit1 tb-profiler1 Trim Galore1 VAMB1 varlociraptor1 Variant Effect Predictor (VEP)1 VSEARCH1 WGCNA1 More...

Galaxy82 Nextflow57 Common Workflow Language54 Snakemake41 Python39 Scipion18 Jupyter13 Autosubmit10 KNIME9 Playbook Workflow Builder Workflow9 R markdown8 Docker6 Workflow Description Language6 Bpipe5 COMPSs5 Shell Script5 BioCompute Object2 Argo Workflow1 Perl1 Pi1 Plug-in1 R Markdown document1 Rbbt1 More...

Bioinformatics76 Genomics25 Nextflow20 Python19 Workflows19 Biodiversity16 CWL15 Transcriptomics15 imaging13 Annotation12 image processing12 Metagenomics12 Ecology11 Machine Learning11 covid-1910 Proteomics10 cancer9 workflow9 Assembly8 bioimaging8 rna-seq8 variant calling8 variant_calling8 Cheminformatics7 Galaxy7 SARS-CoV-27 Virus7 Autosubmit6 EC-Earth6 groovy6 IMPaCT-ISCIII6 nanopore6 Task aggregation6 Wrappers6 Alignment5 bpipe5 FAIR workflows5 OMERO5 pediatric5 RDM5 rna5 scipion5 Snakemake5 antimicrobial resistance4 astronomy4 bbmap4 Climate4 copernicus4 Databases4 display4 FAIR4 helicase4 identification4 jupyter4 molecular dynamics4 ONT4 rare diseases4 Retrosynthesis4 rna virus4 RNASEQ4 scRNA-seq4 SNPs4 spa4 vadr4 vardict4 Virology4 vvv2_display4 16S3 Amplicon3 binning3 ChIP-seq3 Classification3 cryoem3 Deep learning3 Earth-system3 Gene Prioritization3 genome_assembly3 Knime3 mass-spectrometry3 metagenome3 microbial3 Ocean3 OME-Zarr3 Pathway Analysis3 pathway prediction3 R3 S33 SANBI3 spatial3 spatial transcriptomics3 Statistics3 Synthetic Biology3 AMR2 AMR-detection2 antimicrobial-resistance-genes2 BGE2 Bioimage2 biosynthetic-gene-clusters2 CellProfiler2 cfDNA2 CODEX22 Copy Number Variation2 coronavirus2 cosifer2 covid19.galaxyproject.org2 DE_NOVO2 dengue2 Drug design2 earth observation2 Electron microscopy2 Epigenomics2 ExomeDepth2 exploration2 gene set enrichment analysis2 genome2 Genome assembly2 Germline2 Glacios2 GWAS2 illumina2 kallisto2 kraken2 linkage_map2 manta2 MERS2 Metabarcoding2 metabolic engineering2 Metabolomics2 mirna prediction2 name:ONT2 networks2 NFDI4BIOIMAGE2 NGS2 NSP132 pacbio2 pangeo2 pathogen2 pathway design2 personalized medicine2 Pipeline2 plasmids2 prediction2 protein2 Protein-Protein interaction prediction2 quality control2 quantification2 Report2 Semantic Network Analysis2 sequence annotation2 single-cell2 smart-seq 22 STAR2 structural variants2 TalosArctica2 TitanKrios2 TransBioNet2 Virtual Drug Screening2 WDL2 west nile2 zika2 10.3390/microorganisms100202921 10X1 18S1 ABR1 adaptor1 AI governance1 AI transparency1 air-quality1 Alternative splicing1 ancient dna1 annotsv1 ARC1 ARTIC1 Artificial Intelligence1 AutoDock1 automated workflows1 BAM1 bash1 Behavioral data1 benchamrking1 benchmarking1 bioformats1 bioformats2raw1 Bioinformatics tool1 biomarker-discovery1 Biomedical Ontologies1 BioScanEurope1 BioStudies1 blast1 bowtie21 brokering1 BUSCO1 BWA1 C++1 carveme1 CATH1 Cellranger1 citizen science1 Climate model1 cmip61 CNVkit1 Community_metrics1 community-detection1 Compomics1 Connectome-based predictive modeling1 Consensus1 conservation genomics1 contamination1 Conversion1 CPM1 cryosparc1 Darwin core1 data annotation1 data fusion1 data integration1 Data package1 data reproducibility1 data retrieval and transformation1 data transformation1 data wrangling1 DataOne1 decoding1 differential_expression1 disease outcome prediction1 DL1 DNA-seq1 Docker1 Domain-Domain interaction1 dRNAseq1 drug discovery1 durg response simulation1 Earth Sciences1 Ecological metadata language1 eDNA1 EGA-archive1 EML1 eml-annotation1 ena1 eosc-nordic1 ERGA1 Ethics1 Evaluation1 EVORA1 Explainable AI1 FAIR data1 fastp1 FastQC1 fcs1 featurecounts1 file conversion1 filtering1 fMRI1 Fragmentomics1 Galaxy-E1 GATK31 GATK41 GEM1 genbank1 gene expression analysis1 gene expression correlation1 gene expression data wrangling1 Gene ontology term sets similarity1 genetic design1 genome erosion1 genome-annotation1 genomic ancestry1 genomics-visualization1 geo database mining1 gff31 GLM1 gnps1 graph1 Gravitational Waves1 GRIDS1 GRIDSS1 GRN1 GTN1 GUI1 Hi-C1 high-throughput1 high-throughput_sequencing_analysis1 historical dna1 hmdb1 host-pathogen PPIs1 HPC1 HuggingFace1 Human-AI collaboration1 Human-in-the-loop1 IA1 image file format1 image-analysis1 image-segmentation1 imageJ1 intelligences artificiel1 ITS1 Java1 k-mer1 Labbook1 LiftOver1 long-read-sequencing1 long-reads1 Luigi & Rufus workflow1 MAG1 Magic1 mapping1 Marine omics1 MARS-seq1 massbank1 MaxQuant1 memote1 Merqury1 metatranscriptomics1 microbiome1 microscopy1 Modeling1 modern dna1 MRI1 Multi-omics1 MultiQC1 Multivariate1 n501 name:ILLUMINA1 natural history collections1 ncbi sra1 ndvi1 NGFF1 non-coding1 Non-parametric1 nonspliced1 NS31 observation1 OME-TIFF1 oncology1 openebench1 oxford-nanopore1 paired-end1 pangenome1 Parsl1 pathogenicity score1 Pathology1 Pathway co-occurrence1 Perl1 Permeability1 Pfam1 phasing1 phylogenetics1 phylogeny1 plasmid1 pod51 Polarized images1 polygenic risk score1 polygenic score1 population genomics1 Presence_absence1 prognosis1 Proline1 Protein domains1 protein interactin data triplification1 protein interactions database integration1 Protein-Protein Interaction1 proteins network augmentation1 Provenance1 public cancer datasets exploration1 Public colorectal cancer dataset1 publication1 qPCR1 QTL mapping1 quality1 R-package1 radio interferometry1 RDF1 rdkit1 reads_selection1 reads_simulation1 Reconstruction1 Regulatory Mendelian Mutation score1 RELIANCE1 ReMM1 repeat1 Reproducibility of Results1 sambamba1 SAMTools1 scientific publication text mining1 Semantic Comparison1 Semantic Interpretation1 semantic web standards1 sentinel-2 data1 sequence search1 shotgun1 SIM1 Single cell clustering1 single particle analysis1 single-cell-rna-seq1 single-end1 SKA1 Species abundance1 spectra1 standardisation1 submission1 SV1 synteny1 taxonomic-classification1 taxonomy1 tcga1 telomere1 Tomography1 Toxicology1 toxins1 Trans-Proteomic1 tuberculosis1 validaiton o protein interaction predictions1 variant1 variant pathogenicity prediction1 variation1 VCF1 virulence-factors1 visualization1 wes1 WGS1 whole genome sequencing1 yolo1 More...

Daniel Marchan13 Daniel Clarke13 Yvan Le Bras12 Bart Nijsse12 Laura Rodriguez-Navas9 Anne Fouilloux9 Jean-Marie Burel9 Miguel Vazquez8 Yasmmin Martins7 Fabrice Touzain6 Pablo Goitia6 Yolanda Benítez Quesada6 Jasper Koehorst5 Sergi Sayols5 Aldar Cabrelles5 Riccardo Massei5 haoke deng5 Melchior du Lac4 Willem de Koning4 Peter van Heusden4 johan Rollin4 Dennis Dollée4 Konstantinos Kyritsis4 Bryan Raubenolt4 Thomas N4 Irene Sánchez3 Juma Bayjan3 Casper de Visser3 Jeanette Reinshagen3 Pablo Riesgo Ferreiro3 Kateřina Storchmannová3 Oliver White3 Marie Jossé3 Daniel Del Hoyo3 Luca Pireddu2 Beatriz Serrano-Solano2 Simone Leo2 Ross Thorne2 Cyril Noel2 Volodymyr Savchenko2 Johannes Köster2 thodk2 Elida Schneltzer2 Pasi Korhonen2 Kary Ocaña2 Cristiane Taniguti2 Peter Menzel2 Adam Tofilski2 David James Sherman2 Stevie Pederson2 Tina Tian2 Daan Hazelaar2 Andrea Furlani2 Vasiliki Panagi2 Yi Sun2 Nathaniel Matteson2 Aishwarya Iyer2 Dominik Lux2 Michael Lynch2 Oleg Kalashev2 Manuel Giménez de Castro Marciani2 SaibotMagd magd2 Hugo Lefeuvre2 Jiamian He2 Yichun Feng2 Alem Gusinac2 Huihai Wu2 Cenny Taslim2 Martijn Melissen2 Caroline Ott2 Stian Soiland-Reyes1 Bert Droesbeke1 Laura del Cano1 Douglas Lowe1 ignacio eguinoa1 Andrea Giachetti1 Michael R. Crusoe1 Matteo Chiara1 Carlos Oscar Sorzano Sanchez1 phytopat gembloux1 johan Rollin1 Julian Uszkoreit1 Helena Rasche1 Dennis Hendriksen1 Daphne Wijnbergen1 Patrick Durand1 Javier Moldon1 Oliver Woolland1 Bianca Pasat1 Rob Edwards1 Valentin Tilloy1 Michael Roach1 Ryan Patterson-Cross1 Alexander Botzki1 [email protected] Panou1 Haris Zafeiropoulos1 Kaur Alasoo1 Hrishikesh Dhondge1 Marvin Martens1 Tong LI1 Naga Kasinadhuni1 Radek Veverka1 Tim Booth1 Samuel Lambert1 Bugra Oezdemir1 Max Schubach1 Luc Cornet1 Silas Kieser1 Felicita Gernhardt1 Nico Trummer1 Ang Guo1 Diego Garrido-Martín1 Roderic Guigó1 Bruno P. Kinoshita1 Luca Cozzuto1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Sanjay Nagi1 Tom Brown1 Elisabetta Spinazzola1 Anand Maurya1 Agata Kilar1 Vincent Hervé1 Akshay Akshay1 Phuong Doan1 Davide Gurnari1 David Yuan1 Justin Sonneck1 Bram Danneels1 Zafran Hussain Shah1 Denys Savchenko1 Michael Hall1 Rafael Terra1 Michael Lloyd1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Carlos Classen1 Verena Kutschera1 Usman Rashid1 Zsolt Balázs1 Jinhu Wang1 Pavel Akhtyamov1 Francis Charette-Migneault1 Sebastian Röner1 仕卓 张1 Mahesh Binzer-Panchal1 Jen-Hung Wang1 Liang Cheng1 Benjamin Istace1 Alberto Aguado1 YIN ZHANG1 Kieran Atkins1 Tobias Bachmann1 Tristan Pelser1 Albert Puiggros1 Jens Krumsieck1 Zhi Song1 Viola Fanfani1 Lorenz Gruber1 zhantian xu1 Natasha Clarke1 Jonas Kasmanas1 Zhen Zhang1 Tyler Lovelace1 Avani Bhojwani1 Yichao Hua1 Azusa Kubota1 Bundit Boonyarit1 Jorge Mas Gomez1 Ma Wenlong1 Crist John Pastor1 Thanh-Hai Le1 Qibo Xu1 Thomas Barba1 Gemy Kaithakottil1 Diane Duroux1 Myrthe van Baardwijk1 Marek Cmero1 Joy Chen1 Nikolay Oskolkov1 Arkadiusz Sitek1 Zhixing Feng1 Takudzwa Musarurwa1 Abao Xing1 Caner Bağcı1 Won-Min Song1 qiankunzizairen Liu1 Isabella Brown1 Pierre Poulain1 Evan P. Troendle1 Chris Wyatt1 Bryce Fukuda1 Stefan Dvoretskii1 Fangfang Li1 João Cavalcante1 malmcajs Malm1 marcin joachimiak1 Lidong Guo1 Philippe Ruiz1 Jiahui Luo1 Sumeet Tiwari1 Jakob Peder Pettersen1 Júlia Ortís Sunyer1 Pedro Carvalho1 Kelly Sovacool1 Johannes von Kleist1 Christopher Tibbs1 Xiaomin Zhang1 Harpreet Kaur1 Cigdem Sevim Bayrak1 More...

UNLOCK17 Scipion CNB16 NIH CFDE Playbook Workflow Partnership13 PNDB12 BSC-CES10 Galaxy Climate9 OME9 PerMedCoE8 IBISBA Workflows7 yPublish - Bioinfo tools7 Integrated and Urban Plant Pathology Laboratory6 EJPRD WP13 case-studies workflows6 ANSES-Ploufragan6 EGA6 Bioinformatics Unit IIS-FJD6 IMBforge5 UX trial team5 iPC: individualizedPaediatricCure5 Seq4AMR5 Euro-BioImaging5 UFZ - Image Data Management and Processing Workflows5 mzlab5 NanoGalaxy4 SANBI Pathogen Bioinformatics4 Biodata Analysis Group4 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4 BioImage Informatics and Analysis Workflows4 Computational Metabolomics (UoB)4 SARS-CoV-2 Data Hubs3 SeBiMER3 Snakemake-Workflows3 ODA3 CO2MICS Lab3 Medizinisches Proteom-Center, Medical Bioinformatics3 EU-Openscreen3 X-omics3 TRON gGmbH3 TRE-FX3 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)3 Chemical Data Lab3 NHM Clark group3 FAIR-EASE3 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 TransBioNet2 CRC Cohort2 Workflows Australia2 Air Quality Prediction2 NBIS2 Read2Map2 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2 KircherLab2 Apis-wings2 MISTIC2 Black Ochre Data Labs2 Workflows for geographic science2 Katdetectr2 EMBL-Bioimage Analysis Support2 CholGen2 Peter Menzel's Team2 Culhane Lab2 ErasmusMC Clinical Bioinformatics2 Astroparticle Lab2 CDPP2 FAIR_thesis: Marine acoustic data2 Biomedical_LLM2 CMG-GUTS2 EI Papatheodorou Group2 Kendall-Theisen lab pipelines2 BiRD2 Systems and Synthetic Biology2 BioFAIR2 CSB2 NMR Workflow1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 Italy-Covid-data-Portal1 MOLGENIS1 IAA-CSIC1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 Quadram Institute Bioscience - Bioinformatics1 HecatombDevelopment1 OpenEBench1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 Single Cell Unit1 emo-bon1 CINECA1 Toxicology community1 AGRF BIO1 ELIXIR Belgium1 CAPSID1 Edinburgh Genomics1 BCCM_ULC1 Computational Science at HZDR1 Big data in biomedicine1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 Bioinformatics Unit @ CRG1 ELIXIR Proteomics1 Zavolan Lab1 Metabolomics-Reproducibility1 NGFF Tools1 Bioinformatics workflows for life science1 EOSC-Life WP3 OC Team, cross RI project1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 Metagenomic tools1 Polygenic Score Catalog1 MLme: Machine Learning Made Easy1 Dioscuri TDA1 MMV-Lab1 EBP-Nor1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 CEMCOF1 Jackson Laboratory NGS-Ops1 BRAIN - Biomedical Research on Adult Intracranial Neoplasms1 Institute for Human Genetics and Genomic Medicine Aachen1 Plant-Food-Research-Open1 KrauthammerLab1 CRIM - Computer Research Institute of Montréal1 Medvedeva Lab1 Protein-protein and protein-nucleic acid binding site prediction research1 IDUN - Drug Delivery and Sensing1 EnrichDO1 Application Security - Test Crypt4GH solutions1 RenLabBioinformatics1 Into the deep1 CPM1 Research Data Management ICE-21 LiDAR1 FAIRagro M4.41 QuackenbushLab1 Virus sequencing team1 SOS1 CSUbioinformatics1 SIMEXP1 Kasmanas1 Structural Variation Analysis1 CausalCoxMGM Team1 CrustyBase1 Applied Computational Cancer Research1 Click-qPCR1 BAID Team1 Vector informatics and genomics group1 AlmondBreedingLab1 Artificial Design for Intelligent Breeding1 MTB Bioinformatics Workflows1 RTC Bioinformatics1 ColoPola: A polarimetric imaging dataset for colorectal cancer detection1 AI in Zhou Lab1 Gevaert Lab1 AMRMALDI1 EI Core Bioinformatics Group1 SolutionMake1 GENEX1 iPol1 zxfenglab1 BioX Fanatics1 Li-Omics Lab1 ZiemertLab1 Song Lab1 PanGIA1 Transcriptomics in unexplained recurrent pregnancy loss1 datafun1 Biodepot Spatial Proteomics Team1 WEHI SODA Hub1 Anesthesia and Neurocritical Care Medicine1 BioimageAIpub1 Dalmolin Systems Biology Group1 FAIRMD1 KG-Microbe1 BGIQD1 GenotoulBioinfo1 Liver Polyploidy Research Team1 UiT-CANS1 PathoFact21 Polyploid Spatial Transcriptomics Team1 CCBR1 FONDA T9 Project Team1 Exeter Genetics1 HP-Phasing1 CPSM1 Bayrak Lab1 Eco-Flow1 More...

Independent Teams407 ERGA3 Galaxy3 ELIXIR2 EOSC-Life1 Biodiversity Genomics Europe (BGE)1

Bart Nijsse17 Jasper Koehorst15 Yvan Le Bras11 Jean-Marie Burel9 Laura Rodriguez-Navas8 Pablo Goitia6 Coline Royaux5 Sergi Sayols5 Aldar Cabrelles5 Riccardo Massei5 Melchior du Lac4 José Mª Fernández4 Friederike Ehrhart4 Bryan Raubenolt4 Juma Bayjan3 Ozan Ozisik3 Patrick Durand3 Cyril Noel3 Laura Leroi3 Germán Royval3 Cenna Doornbos3 Casper de Visser3 Jeanette Reinshagen3 Konstantinos Kyritsis3 Luca Pireddu2 Douglas Lowe2 Michael R. Crusoe2 Julian Uszkoreit2 Alexandre Cormier2 Pierre Cuzin2 Volodymyr Savchenko2 Philipp Gormanns2 Kary Ocaña2 Cristiane Taniguti2 Peter Menzel2 Diego Garrido-Martín2 Roderic Guigó2 Stevie Pederson2 Andrea Furlani2 Phuong Doan2 Denys Savchenko2 Kateřina Storchmannová2 Changlin Ke2 Dominik Lux2 Marie Jossé2 Manuel Giménez de Castro Marciani2 Huihai Wu2 Cenny Taslim2 Audrey Bihouee2 Martijn Melissen2 Stian Soiland-Reyes1 Bert Droesbeke1 Martin Beracochea1 Anne Fouilloux1 Matthias Haimel1 Carlos Oscar Sorzano Sanchez1 Helena Rasche1 Oliver Woolland1 Johannes Köster1 Valentin Tilloy1 Michael Roach1 Elida Schneltzer1 Luiz Gadelha1 Asier Gonzalez-Uriarte1 Woosub Shin1 Ryan Patterson-Cross1 Haris Zafeiropoulos1 Hrishikesh Dhondge1 Pasi Korhonen1 Marvin Martens1 Tazro Inutano1 Tong LI1 Benjamin Wingfield1 Anna Niehues1 Marie-Dominique Devignes1 Tim Booth1 Samuel Lambert1 Dennis Dollée1 Lucas Cruz1 Pablo Riesgo Ferreiro1 Felicita Gernhardt1 Kelly Sovacool1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Veit Schwämmle1 Luiz Gadelha1 Vasiliki Panagi1 Josh Moore1 Elisabetta Spinazzola1 Agata Kilar1 Akshay Akshay1 Davide Gurnari1 David Yuan1 Justin Sonneck1 Zafran Hussain Shah1 Michael Hall1 Rafael Terra1 Aishwarya Iyer1 Amy Curwin1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Carlos Classen1 Jordi Rambla1 Pavel Akhtyamov1 Sebastian Röner1 仕卓 张1 Mahesh Binzer-Panchal1 Martin Pippel1 Jen-Hung Wang1 Birgit Rijvers1 Liang Cheng1 Benjamin Istace1 Jean-Marc Aury1 Caroline Belser1 Kieran Atkins1 Tobias Bachmann1 Albert Puiggros1 Jens Krumsieck1 Viola Fanfani1 Lorenz Gruber1 Hugo Lefeuvre1 Natasha Clarke1 Jiamian He1 Lune Bellec1 Jonas Kasmanas1 Alem Gusinac1 Thomas Ederveen1 Qibo Xu1 Samuel Chaffron1 Gemy Kaithakottil1 David Swarbreck1 Marek Cmero1 Won-Min Song1 Evan P. Troendle1 Bryce Fukuda1 Marco Nolden1 Stefan Dvoretskii1 João Cavalcante1 marcin joachimiak1 Sam Haynes1 Sumeet Tiwari1 Jakob Peder Pettersen1 Júlia Ortís Sunyer1 Luis F. Delgado1 Christopher Tibbs1 Harpreet Kaur1 Cigdem Sevim Bayrak1 More...

CryoEM Facility Workflows10 Biodiversity & ecology workflows8 IDR7 EC-Earth3 Workflow Collection6 EuCanImage FHIR ETL Implementation5 CEITEC CryoEM Facility Workflows3 Workflows in EuroScienceGateway3 BY-COVID related workflows3 TronFlow2 Genome Assembly Workflows for ERGA-BGE genomes2 IDR searcher2 OGC CWL Application Packages1 More...

Bioinformatics40 Biomedical science14 Genomics13 Metagenomics13 Computational biology12 Biodiversity10 Ecology10 Bioimaging9 Sequence assembly9 Machine learning8 Transcriptomics8 Workflows8 Data management7 Imaging7 Microbiology7 Sequence analysis6 Data mining5 Drug discovery5 Gene expression5 Genetic variation5 Metabolomics5 Proteomics5 Computer science4 Data visualisation4 Metagenomic sequencing4 Microbial ecology4 RNA-Seq4 Compound libraries and screening3 Data curation and archival3 Data integration and warehousing3 Data quality management3 Environmental sciences3 Metatranscriptomics3 Molecular interactions, pathways and networks3 Oncology3 Preclinical and clinical studies3 Protein interactions3 Rare diseases3 Sample collections3 Sequencing3 Antimicrobial resistance2 Cheminformatics2 Copy number variation2 DNA polymorphism2 Gene structure2 Gene transcripts2 Pharmacology2 Physics2 Protein interaction experiment2 Public health and epidemiology2 Quantitative genetics2 Biochemistry1 ChIP-seq1 Comparative genomics1 Cryogenic electron microscopy1 DNA mutation1 Drug development1 Epigenomics1 Evolutionary biology1 FAIR data1 Functional genomics1 Genetics1 Genotype and phenotype1 Human genetics1 Immunoinformatics1 Immunology1 Immunoproteins and antigens1 Infectious disease1 Marine biology1 Medical imaging1 Medical informatics1 Medicinal chemistry1 Metabarcoding1 Microbial collection1 Molecular genetics1 Multiomics1 Nucleic acid sites, features and motifs1 Ontology and terminology1 Pathology1 Phylogenetics1 Plant biology1 Protein binding sites1 Protein folds and structural domains1 Protein variants1 Proteins1 Proteomics experiment1 Reproductive health1 RNA1 Single-cell sequencing1 Software engineering1 Statistics and probability1 Structural variation1 Synthetic biology1 Translational medicine1 Virology1 More...

Sequencing quality control8 Gene functional annotation7 Sequence assembly6 Taxonomic classification6 Conversion4 Annotation3 Calculation3 Data retrieval3 Feature extraction3 Gene-set enrichment analysis3 Genome annotation3 Peptide identification3 Protein interaction network analysis3 RNA-Seq analysis3 Standardisation and normalisation3 Variant calling3 Alignment2 Clustering2 Correlation2 Data handling2 Differential gene expression profiling2 Genome assembly2 Haplotype mapping2 Image analysis2 Label-free quantification2 Labeled quantification2 Modelling and simulation2 Prediction and recognition2 Protein identification2 Protein interaction network prediction2 Protein quantification2 Protein-protein interaction analysis2 Read mapping2 Statistical modelling2 Visualisation2 Weighted correlation network analysis2 Antimicrobial resistance prediction1 Binding site prediction1 Classification1 Contact map calculation1 Copy number variation detection1 Data analysis1 Data formatting1 Demultiplexing1 Dimensionality reduction1 DNA barcoding1 Enrichment analysis1 Expression correlation analysis1 Expression profile clustering1 Feature selection1 Format detection1 Gene expression profiling1 Generation1 ID mapping1 Image annotation1 Isotope-coded protein label1 k-mer counting1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Network visualisation1 Nucleic acid property calculation1 Phylogenetic inference1 Principal component analysis1 Protein function prediction1 Quantification1 Read binning1 Regression analysis1 Relation extraction1 RNA-seq read count analysis1 Sequence alignment1 Sequence alignment analysis (site correlation)1 Sequence annotation1 Sequence contamination filtering1 Sequence distance matrix generation1 Sequence feature detection1 Sequence profile generation1 Single particle analysis1 Statistical inference1 Text annotation1 Text mining1 Transcription factor binding site prediction1 Variant classification1 Variant filtering1 Variant prioritisation1 More...

Biochemistry, Genetics and Molecular Biology12 Computer Science9 Agricultural and Biological Sciences6 Earth and Planetary Sciences3 Immunology and Microbiology3 Environmental Science1 Medicine1 More...

Stable169 Work-in-progress71 Deprecated7

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