Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Common Workflow Language2
Submitter
Bart Nijsse2
Team
UNLOCK2
Space
Independent Teams2
Topic annotations
Genome annotation2
Operation annotations
Genome annotation2
Sequence assembly3
Sequencing quality control3
Annotation2
Gene functional annotation1
Metabolic pathway prediction1
Sequence contamination filtering1
Taxonomic classification1
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Maturity
Work-in-progress2
2
Workflows matching the given criteria:
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Operation annotations:
Genome annotation2
Work-in-progress
Workflow for microbial (meta-)genome annotation
Input is a (meta)genome sequence in fasta format.
-
bakta
-
KoFamScan (optional)
-
InterProScan (optional)
-
eggNOG mapper (optional)
-
To RDF conversion with SAPP (optional, default on) --> SAPP conversion Workflow in WorkflowHub
Work-in-progress
Workflow for converting (genome) annotation tool output into a GBOL RDF file (TTL/HDT) using SAPP
Current formats / tools:
- EMBL format
- InterProScan (JSON/TSV)
- eggNOG-mapper (TSV)
- KoFamScan (TSV)
git: https://gitlab.com/m-unlock/cwl
SAPP (Semantic Annotation Platform with Provenance):
https://gitlab.com/sapp
https://academic.oup.com/bioinformatics/article/34/8/1401/4653704
