Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
BBMap1
BUSCO1
CheckM1
FastQC1
Flye1
kraken21
MaxBin1
MetaBAT 21
Minimap21
NanoPlot1
QUAST1
SemiBin1
SPAdes1
More...
Workflow type
Common Workflow Language1
Submitter
Changlin Ke1
Team
UNLOCK1
Space
Independent Teams1
Topic annotations
Bioinformatics1
Data quality management1
Metagenomic sequencing1
Metagenomics1
Sequence assembly1
Operation annotations
Bioinformatics1
Maturity
Work-in-progress1
1
Workflow matching the given criteria:
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Creator:
Changlin Ke1
Topic annotations:
Bioinformatics1
Work-in-progress
Workflow (hybrid) metagenomic assembly and binning
- Workflow Illumina Quality: https://workflowhub.eu/workflows/336?version=1
- FastQC (control)
- fastp (quality trimming)
- kraken2 (taxonomy)
- bbmap contamination filter
- Workflow Longread Quality:
- NanoPlot (control)
- filtlong (quality trimming)
- kraken2 (taxonomy)
- minimap2 contamination filter
- Kraken2 taxonomic classification of FASTQ reads
- SPAdes/Flye (Assembly)
- Pilon/Medaka/PyPolCA (Assembly polishing)
- QUAST (Assembly ...
Type: Common Workflow Language
Creators: Bart Nijsse, Jasper Koehorst, Changlin Ke
Submitter: Bart Nijsse
