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Workflow type
Common Workflow Language1
Submitter
Konstantinos Kyritsis1
Space
Independent Teams1
Topic annotations
RNA-Seq analysis1
Maturity
Stable1
1
Workflow matching the given criteria:
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Operation annotations:
RNA-Seq analysis1
Stable
A CWL-based pipeline for processing RNA-Seq data (FASTQ format) and performing differential gene/transcript expression analysis.
On the respective GitHub folder are available:
- The CWL wrappers for the workflow
- A pre-configured YAML template, based on validation analysis of publicly available HTS data
- A table of metadata (
mrna_cll_subsets_phenotypes.csv
), based on the same validation analysis, to serve as an input example for the design of comparisons during differential expression ...
Type: Common Workflow Language
Creators: Konstantinos Kyritsis, Nikolaos Pechlivanis, Fotis Psomopoulos
Submitter: Konstantinos Kyritsis