Workflows
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Query
Created At
Updated At
Tool
ToolDistillator3
MultiQC20
SAMtools16
fastp11
gfastats9
BEDTools8
Bowtie 27
BUSCO7
Cutadapt7
BWA6
lofreq6
Minimap26
ggplot25
MACS5
snpEff5
Bandage4
BCFtools4
GenomeScope 2.04
kraken24
Merqury4
QualiMap4
FastQC3
FASTX-Toolkit3
gffread3
Gromacs3
iVar3
Open Babel3
taxonomy_krona_chart3
AmberTools2
BamTools2
biomformat2
bx-python2
Cufflinks2
JBrowse2
MAPseq2
MaxQuant2
Medaka2
PRINSEQ2
purge_dups2
QUAST2
RDKit2
seqtk2
STAR2
StringTie2
Trimmomatic2
ABRicate1
ampvis1
anndata1
Bakta1
Binette1
BLAST1
Bracken1
Bwa-mem21
CheckM1
ChemicalToolbox1
Clair31
Clustal 2 (Clustal W, Clustal X)1
cmsearch-deoverlap1
CONCOCT1
CoverM1
dastool1
DeepTools1
DESeq21
dRep1
edgeR1
eggNOG-mapper v21
FastTree1
FEELnc1
Flye1
FreeBayes1
GOseq1
GTDB-Tk1
Helixer1
Infernal1
Integron Finder1
InterProScan (EBI)1
iqtree1
ISEScan1
KrakenTools1
MAFFT1
MAKER1
MaxBin1
MEGAHIT1
Meryl1
MetaBAT 21
MetaNovo1
metaspades1
MFAssignR1
msConvert1
MSstats1
NanoPlot1
Newick Utilities1
OMArk1
PlasmidFinder1
Recentrifuge1
SCANPY1
SemiBin1
SeqCode1
shovill1
snipit1
SRA Software Toolkit1
SuCOS1
Unipept1
UniProt1
VAPOR1
Vcflib1
More...
Workflow type
Galaxy3
Tag
ABRomics3
bacterial-genomics3
Genomics3
FASTQ2
paired-end2
quality2
Annotation1
Assembly1
fasta1
genome-annotation1
taxonomy-assignment1
trimming1
More...
Submitter
WorkflowHub Bot3
Assembly of bacterial paired-end short read data with generation of quality metrics and reports
Type: Galaxy
Creators: Abromics , Pierre Marin, Clea Siguret, abromics-consortium
Submitter: WorkflowHub Bot
Short paired-end read analysis to provide quality analysis, read cleaning and taxonomy assignation
Type: Galaxy
Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium
Submitter: WorkflowHub Bot
Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.
Type: Galaxy
Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium
Submitter: WorkflowHub Bot