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CWL workflow SARS-CoV-2 (Project)
Description: CWL workflows related to virus genomics with focus on SARS-CoV-2.
SEEK ID: https://workflowhub.eu/projects/6
Description: CWL workflows related to virus genomics with focus on SARS-CoV-2.
SEEK ID: https://workflowhub.eu/projects/6
- COVID-19 Biohackathon
- Connor Lab
- GalaxyProject SARS-CoV-2
- InSaFLU
- nf-core viralrecon
- CWL workflow SARS-CoV-2
- Standard Operating Protocol for SNPs and INDELs detection using VARSCAN2.
- Standard Operating Protocol for SNPs and INDELs detection using SAMTools.
- Standard Operating Protocol for SNPs and INDELs detection using GATK4.
- Virus genome assembly with Unicycler and Spades.
- var-PE
- Genomic variants - SNPs and INDELs detection using GATK4.
- Genomic variants - SNPs and INDELs detection using VARSCAN2.
- Genomic variants - SNPs and INDELs detection using GATK4 spark based tools.
- Genomic variants - SNPs and INDELs detection using SAMTools.
- V-Pipe
- Test team
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