Workflows
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Created At
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Workflow type
Nextflow1
Submitter
Ekaterina Sakharova1
Team
MGnify1
Maturity
Stable1
1
Workflow matching the given criteria:
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Stable
The containerised pipeline for profiling shotgun metagenomic data is derived from the MGnify pipeline raw-reads analyses, a well-established resource used for analyzing microbiome data. Key components:
- Quality control and decontamination
- rRNA and ncRNA detection using Rfam database
- Taxonomic classification of SSU and LSU regions
- Abundance analysis with mOTUs
