WorkflowHub

13 items tagged with 'Workflows'.

People (13)

Andrea Telatin

Teams: Quadram Institute Bioscience - Bioinformatics

Organizations: Quadram Institute

https://orcid.org/0000-0001-7619-281X

Expertise: Bioinformatics, Genomics, Metabarcoding, Metagenomics, Microbiology, NGS, Python, Workflows

Tools: Genomics, Microbiology, Transcriptomics

João Cavalcante

Teams: Dalmolin Systems Biology Group

Organizations: Bioinformatics Multidisciplinary Environment, Dalmolin Systems Biology Group

https://orcid.org/0000-0001-7513-7376

Expertise: Bioinformatics, Metagenomics, Python, R, Systems Biology, Workflows

Tools: Nextflow, Transcriptomics

Gemy Kaithakottil

Teams: EI Core Bioinformatics Group

Organizations: Earlham Institute

https://orcid.org/0000-0003-1360-7808

Expertise: Bioinformatics, Data Management, Genomics, High Performance Computing, NGS, Python, R, Scientific workflow developement, Software Engineering, Workflows

Tools: CWL, Conda, Databases, Galaxy, Genomics, Git, Java, Jupyter notebook, Machine Learning, Nextflow, Perl, Python, R, Single Cell analysis, Snakemake, Transcriptomics, WDL, Workflows, nf-core

Gemy Kaithakottil is a Senior Bioinformatician / Developer at the Earlham Institute

Pablo Goitia

Teams: BSC-CES

Organizations: Barcelona Supercomputing Center

https://orcid.org/0009-0004-2011-6462

Expertise: Computer Science, High Performance Computing, Software Engineering, Workflows, workflow managers, Distributed Computing

Tools: Autosubmit

Autosubmit developer at Barcelona Supercomputing Center (BSC)

Sergio Mendoza

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-8878-4310

Expertise: High Performance Computing, Distributed Computing, Workflows

Tools: C/C++, Databases, Java, Python, Web services

Gonzalo Rizzo

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-5753-3869

Expertise: Machine Learning, R, Scientific workflow developement, Workflows, Agronomy, Biostatistics

Tools: Conda, Databases, Python, R, Snakemake

Mahesh Binzer-Panchal

Teams: NBIS, ERGA Assembly

Organizations: NBIS – National Bioinformatics Infrastructure Sweden

https://orcid.org/0000-0003-1675-0677

Expertise: Bioinformatics, Genomics, Scientific workflow developement, Workflows

Tools: Nextflow, nf-core

I'm a bioinformatician for the National Bioinformatics Infrastrure Sweden. I specialise in de novo genome assembly and workflow development with Nextflow. I'm also a Nextflow ambassador and nf-core maintainer.

Francis Charette-Migneault

Teams: CRIM - Computer Research Institute of Montréal

Organizations: CRIM

https://orcid.org/0000-0003-4862-3349

Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision

Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC

Clea Siguret

Teams: Not specified

Organizations: Not specified

https://orcid.org/0009-0005-6140-0379

Expertise: Bioinformatics, Computer Science, Data Management, Genomics, Python, R, Scientific workflow developement, Workflows, phylogenomics

Tools: Galaxy, Genomics, Git, Python, R, Workflows

Helge Hecht

Teams: RECETOX SpecDatRI, RECETOX, usegalaxy-eu, ELIXIR Metabolomics, Intergalactic Workflow Commission (IWC)

Organizations: Masaryk University, RECETOX

https://orcid.org/0000-0001-6744-996X

Expertise: Bioinformatics, Cheminformatics, Metabolomics, Python, R, Software Engineering, Workflows

Tools: Metabolomics, Python, R, Workflows, Mass spectrometry, Chromatography

GTN Bot

Teams: Galaxy Training Network

Organizations: Galaxy

Expertise: AI, Workflows

Tools: Python

I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.

Alvaro Gargantilla Becerra

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-0429-2365

Expertise: Bioengineering, Bioinformatics, Scientific workflow developement, Systems Biology, Workflows, Computer Aided Design

Tools: Databases, Jupyter notebook, Nextflow, Python, Transcriptomics, Computational and theoretical biology, SBML, Matlab

Raül Sirvent

Teams: Cluster Emergent del Cervell Humà, Workflows and Distributed Computing, WP6 - Tsunamis, WP7 - Earthquakes, WP8 - Anthropogenic geophysical extremes, WP5 - Volcanoes, Pillar I: Manufacturing, Pillar II: Climate, Pillar III: Urgent computing for natural hazards, eFlows4HPC general, COMPSs Tutorials

Organizations: Barcelona Supercomputing Center

https://orcid.org/0000-0003-0606-2512

Expertise: Workflows, Programming Models, High Performance Computing, Distributed Computing, Provenance

Tools: COMPSs

Established Researcher at Workflows and Distributed Computing Group, Computer Sciences department, Barcelona Supercomputing Center.