4 items tagged with 'pacbio'.
Stable
Using:
- vadr annotation (virus model must be selected in options)
- vardict variant caller
- coverage depth Provides summarizing files:
- png image of variant calling with annotations and coverage depths
- tsv file with all information of significant variants only
Type: Galaxy
Creators: Fabrice Touzain, This study was founded by the French National Research Agency and by Santé publique France as part of the project "EMERGEN". Anses Ploufragan research was also supported by Agglomération de Saint-Brieuc, Département des Côtes d'Armor and Région Bretagne
Submitter: Fabrice Touzain
Created: 19th Jun 2025 at 11:27, Last updated: 19th Jun 2025 at 11:29
Stable
ONTeater is a eukaryotic genome assembly pipeline intended to produce highly-contiguous genomes with a single input of Oxford NanoPore Tech (ONT) longread data, although PacBio is accepted as well. Information can be found here. Originally developed to support genome assembly efforts by OIKOS genomics, predominantly of nonmodel vertebrate species.
Created: 18th Jun 2025 at 14:12, Last updated: 21st Jun 2025 at 08:15
Created: 6th Feb 2025 at 04:04, Last updated: 26th Mar 2025 at 09:57
Created: 4th Jun 2024 at 11:32, Last updated: 5th Apr 2025 at 03:11