WorkflowHub

8 items tagged with 'CWL'.

People (8)

Gemy Kaithakottil

Teams: EI Core Bioinformatics Group

Organizations: Earlham Institute

https://orcid.org/0000-0003-1360-7808

Expertise: Bioinformatics, Data Management, Genomics, High Performance Computing, NGS, Python, R, Scientific workflow developement, Software Engineering, Workflows

Tools: CWL, Conda, Databases, Galaxy, Genomics, Git, Java, Jupyter notebook, Machine Learning, Nextflow, Perl, Python, R, Single Cell analysis, Snakemake, Transcriptomics, WDL, Workflows, nf-core

Gemy Kaithakottil is a Senior Bioinformatician / Developer at the Earlham Institute

Sora Yonezawa

Teams: bonohulab

Organizations: Hiroshima University

https://orcid.org/0009-0004-1874-3117

Expertise: Bioinformatics

Tools: CWL, Genomics, Python, R, Transcriptomics, Jupyter notebook

Hiroshima University, Graduate School of Integrated Sciences for life, Laboratory of Genome Informatics, Ph.D student GitHub: https://github.com/yonesora56

Francis Charette-Migneault

Teams: CRIM - Computer Research Institute of Montréal

Organizations: CRIM

https://orcid.org/0000-0003-4862-3349

Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision

Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC

Bruno P. Kinoshita

Teams: BSC-CES, COMPSs Tutorials

Organizations: Barcelona Supercomputing Center

https://orcid.org/0000-0001-8250-4074

Expertise: Scientific workflow developement, workflow managers, Software Engineering, open source, fuzzy logic, graphs

Tools: CWL, Autosubmit, Cylc, ecFlow

Research Engineer (Workflow Engineer) at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. Working on the Autosubmit workflow manager.

Previously NIWA/Cylc, and Curii/CWL.

Volodymyr Savchenko

Teams: ODA, EuroScienceGateway

Organizations: MMODA, EPFL

https://orcid.org/0000-0001-6353-0808

Expertise: astronomy, Data Management, high-performance computing, image analysis, Scientific workflow developement, Software Engineering

Tools: CWL, Machine Learning, Workflows, Python, Snakemake, Databases

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Bart Nijsse

Teams: UNLOCK, Systems and Synthetic Biology

Organizations: UNLOCK, Wageningen University & Research

https://orcid.org/0000-0001-9524-5964

Expertise: Metagenomics

Tools: CWL, Workflows

Haris Zafeiropoulos

Teams: emo-bon

Organizations: IMBBC-HCMR

https://orcid.org/0000-0002-4405-6802

Expertise: Metagenomics, amplicon analysis, Microbiology, Systems Biology

Tools: CWL

I am a bioinformatician working on microbial ecology and ecosystem functioning at the microbial dimension.