5 items tagged with 'SAMTools'.
A pipeline to investigate horizontal gene transfer from NGS data
Stable
IndexReferenceFasta-nf
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Stable
Exome SAMtools Workflow
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Stable
RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.
Infrastructure_deployment_metadata: Gadi (NCI)
Stable
Author: AMBARISH KUMAR [email protected]; [email protected]
This is a proposed standard operating procedure for genomic variant detection using SAMTools.
It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.
It uses Illumina RNASEQ reads and genome sequence.
