{
    "name": "nf-core/smrnaseq",
    "homePage": "https://github.com/nf-core/smrnaseq",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "cat/cat": {
                        "branch": "master",
                        "git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
                        "installed_by": ["modules"]
                    },
                    "cat/fastq": {
                        "branch": "master",
                        "git_sha": "0997b47c93c06b49aa7b3fefda87e728312cf2ca",
                        "installed_by": ["modules"]
                    },
                    "fastp": {
                        "branch": "master",
                        "git_sha": "95cf5fe0194c7bf5cb0e3027a2eb7e7c89385080",
                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                    },
                    "fastqc": {
                        "branch": "master",
                        "git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
                        "installed_by": ["fastq_fastqc_umitools_fastp"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
                        "installed_by": ["modules"]
                    },
                    "samtools/flagstat": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["bam_stats_samtools", "modules"]
                    },
                    "samtools/idxstats": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["bam_stats_samtools", "modules"]
                    },
                    "samtools/index": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["bam_sort_stats_samtools", "modules"]
                    },
                    "samtools/sort": {
                        "branch": "master",
                        "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                        "installed_by": ["bam_sort_stats_samtools", "modules"]
                    },
                    "samtools/stats": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["bam_stats_samtools", "modules"]
                    },
                    "umicollapse": {
                        "branch": "master",
                        "git_sha": "b97197968ac12dde2463fa54541f6350c46f2035",
                        "installed_by": ["modules"]
                    },
                    "umitools/extract": {
                        "branch": "master",
                        "git_sha": "d2c5e76f291379f3dd403e48e46ed7e6ba5da744",
                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                    },
                    "untarfiles": {
                        "branch": "master",
                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "bam_sort_stats_samtools": {
                        "branch": "master",
                        "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                        "installed_by": ["subworkflows"]
                    },
                    "bam_stats_samtools": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["bam_sort_stats_samtools"]
                    },
                    "fastq_fastqc_umitools_fastp": {
                        "branch": "master",
                        "git_sha": "cabcc0dadf8366aa7a9930066a7b3dd90d9825d5",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfvalidation_plugin": {
                        "branch": "master",
                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}
