/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running minimal tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run sanger-tol/curationpretext -profile test,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'GitHub Test profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    // Limit resources so that this can run on GitHub Actions
    max_cpus    = 20
    max_memory  = '30.GB'
    max_time    = '6.h'

    input       = "/nfs/treeoflife-01/teams/tola/users/dp24/curationpretext/TreeValTinyData/assembly/draft/grTriPseu1.fa"
    outdir      = "./results"
    reads       = "/nfs/treeoflife-01/teams/tola/users/dp24/curationpretext/TreeValTinyData/genomic_data/pacbio/"
    cram        = "/nfs/treeoflife-01/teams/tola/users/dp24/curationpretext/TreeValTinyData/genomic_data/hic-arima/"
    sample      = "CurationPretextTest"
    teloseq     = "TTAGGG"
}
