name: seqtk_cutn
description: Generates a BED file containing genomic locations of lengths of N.
keywords:
  - cut
  - fasta
  - seqtk
tools:
  - seqtk:
      description: Seqtk is a fast and lightweight tool for processing sequences in
        the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into
        one interleaved file.
      homepage: https://github.com/lh3/seqtk
      documentation: https://docs.csc.fi/apps/seqtk/
      tool_dev_url: https://github.com/lh3/seqtk
      licence: ["MIT"]
      identifier: biotools:seqtk
input:
  - - meta:
        type: map
        description: |
          Groovy Map containing sample information
          e.g. [ id:'test', single_end:false ]
    - fasta:
        type: file
        description: A single fasta file to be split.
        pattern: "*.{fasta}"
output:
  - bed:
      - meta:
          type: map
          description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
      - "*.bed":
          type: file
          description: The output bed which summarised locations of cuts
          pattern: "*.{bed}"
  - versions:
      - versions.yml:
          type: file
          description: File containing software versions
          pattern: "versions.yml"
authors:
  - "@DLBPointon"
maintainers:
  - "@DLBPointon"
