This Workflow takes a dataset collection of single-cell ATAC-seq fragments and performs: - preprocessing - filtering - concatenation - dimension reduction - batch correction - leiden clustering ## Associated Tutorial This workflows is part of the tutorial [Multi-sample batch correction with Harmony and SnapATAC2](https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scatac-batch-correction-snapatac2/tutorial.html), available in the [GTN](https://training.galaxyproject.org) ## Features * Includes a [Galaxy Workflow Report](https://training.galaxyproject.org/training-material/faqs/galaxy/workflows_report_view.html) * Uses [Galaxy Workflow Comments](https://training.galaxyproject.org/training-material/faqs/galaxy/workflows_comments.html) ## Thanks to... **Workflow Author(s)**: Timon Schlegel **Tutorial Author(s)**: [Timon Schlegel](https://training.galaxyproject.org/training-material/hall-of-fame/timonschlegel/) **Tutorial Contributor(s)**: [Diana Chiang Jurado](https://training.galaxyproject.org/training-material/hall-of-fame/dianichj/), [Saskia Hiltemann](https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/), [Timon Schlegel](https://training.galaxyproject.org/training-material/hall-of-fame/timonschlegel/) [](https://training.galaxyproject.org/training-material/)