Research Object Crate for ATAC-Seq data processing workflow

Original URL: https://workflowhub.eu/workflows/1760/ro_crate?version=1

This workflow supports processing of bulk ATAC-Seq data from raw reads to genome-wide accessiblity tracks (bigWig) and ATAC peaks. The main steps include read trimming using trimGalore, alignment with bowtie2, coverage generation using samtools and peak calling with MACS2.

Author
License: Apache-2.0

Main Workflow: ATAC-Seq data processing workflow
Size: 14567 bytes

Main Workflow Diagram: CWL/workflows/graph_images/ATAC-Seq_cwlviewer.png
Size: 401426 bytes

Research Object Crate for ATAC-Seq data processing workflow

Contents