Research Object Crate for ChIP-Seq data processing workflow

Original URL: https://workflowhub.eu/workflows/1761/ro_crate?version=1

This workflow supports primary processing of ChIP-Seq data from raw reads to genome-wide ChIP signal tracks and ChIP peaks. The main steps include read trimming using trimGalore, alignment with bowtie2, coverage generation using samtools and peak calling with MACS2.

Author
License
Apache-2.0

Contents

Main Workflow: ChIP-Seq data processing workflow
Size: 9507 bytes
Main Workflow Diagram: CWL/workflows/graph_images/ChIP-Seq_cwlviewer.png
Size: 239349 bytes