Research Object Crate for CUT'N'RUN data processing workflow

Original URL: https://workflowhub.eu/workflows/1765/ro_crate?version=1

This workflow supports processing of bulk CUT'N'RUN data from raw reads to genome-wide accessiblity tracks (bigWig) and CUT'N'RUN peaks. The main steps include read trimming using trimGalore, alignment with bowtie2, coverage generation using samtools and peak calling with MACS2.

Author
License: Apache-2.0

Main Workflow: CUT'N'RUN data processing workflow
Size: 11449 bytes

Main Workflow Diagram: CWL/workflows/graph_images/CUTNRUN_cwlviewer.png
Size: 281345 bytes

Research Object Crate for CUT'N'RUN data processing workflow

Contents