## SnpEff

A SnpEff genome was prepared using the command below after copying the adequate resources in the folder `snpeff/Sars_cov_2.ASM985889v3.101`. 
These files are renamed copies of the DNA FASTA and the GFFv3 file downloaded from Ensembl
```
snpEff build -gff3 -v Sars_cov_2.ASM985889v3.101 -dataDir .
```
