Research Object Crate for Extract transcripts - TSI

This is part of a series of workflows to annotate a genome, tagged with `TSI-annotation`. These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows. The workflows can be run in this order: * Repeat masking * RNAseq QC and read trimming * Find transcripts * Combine transcripts * Extract transcripts * Convert formats * Fgenesh annotation **** About this workflow: * Input: merged_transcriptomes.fasta. * Runs TransDecoder to produce longest_transcripts.fasta * (Runs both the LongOrfs and Predict parts together. Default settings except Long Orfs options: -m =20) * Runs Busco on output.

Author

Anna Syme

License

GPL-3.0

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