Research Object Crate for Fgenesh annotation -TSI

This is part of a series of workflows to annotate a genome, tagged with `TSI-annotation`. These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows. The workflows can be run in this order: * Repeat masking * RNAseq QC and read trimming * Find transcripts * Combine transcripts * Extract transcripts * Convert formats * Fgenesh annotation For this workflow: Inputs: * assembled-genome.fasta * hard-repeat-masked-genome.fasta * If using the mRNAs option, the additional inputs required are .cdna, .pro and .dat files. What it does: * This workflow splits the input genomes into single sequences (to decrease computation time), annotates using FgenesH++, and merges the output. Outputs: * genome annotation in gff3 format * fasta files of mRNAs, cDNAs and proteins * Busco report

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GPL-3.0

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