Workflows

Snakemake1

mirna prediction1 Pathway Analysis1 protein1 Proteomics1 rare diseases1 workflow1

Juma Bayjan1

EJPRD WP13 case-studies workflows1

Independent Teams1

Juma Bayjan1 Friederike Ehrhart1 Ozan Ozisik1 Woosub Shin1 Cenna Doornbos1

Enrichment analysis1

Enrichment analysis1 Genome assembly17 Sequencing quality control17 Variant calling12 Sequence assembly8 Expression analysis7 Variant filtering7 Annotation6 Sequence clustering6 Sequence alignment5 Taxonomic classification5 De-novo assembly4 Genome annotation4 Conversion3 Copy number variation detection3 Data retrieval3 Gene-set enrichment analysis3 Haplotype mapping3 Modelling and simulation3 Protein interaction network analysis3 Transcriptome assembly3 Variant classification3 Antimicrobial resistance prediction2 Calculation2 Correlation2 Differential gene expression profiling2 Filtering2 Gene functional annotation2 Genetic mapping2 Genome visualisation2 Indel detection2 Prediction and recognition2 Protein interaction network prediction2 Scaffolding2 Sequence assembly validation2 Sequence assembly visualisation2 SNP annotation2 SNP detection2 Weighted correlation network analysis2 Analysis1 Binding site prediction1 Classification1 Clustering1 Contact map calculation1 Copy number estimation1 Data handling1 Differential protein expression profiling1 Dimensionality reduction1 DNA barcoding1 Expression correlation analysis1 Feature extraction1 Format detection1 Gene expression profiling1 Genome alignment1 Genome analysis1 Genome comparison1 Global alignment1 ID mapping1 Image analysis1 Information retrieval1 k-mer counting1 Local alignment1 Mapping1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Nucleic acid property calculation1 Operation1 Pairwise sequence alignment1 Peptide identification1 Phasing1 Phylogenetic inference1 Protein identification1 Protein-protein interaction analysis1 Read mapping1 Relation extraction1 RNA-Seq analysis1 Sequence alignment analysis (site correlation)1 Sequence annotation1 Sequence contamination filtering1 Sequence cutting1 Sequence distance matrix generation1 Sequence profile generation1 Sequence trimming1 Single particle analysis1 Standardisation and normalisation1 Statistical calculation1 Statistical modelling1 Structural variation detection1 Structure-based sequence alignment1 Text annotation1 Text mining1 Transcription factor binding site prediction1 Validation1 Visualisation1 More...

Stable1