Workflows

Galaxy2

ERGA2 Assembly+QC1 Hi-C1 HiC1 name:ASSEMBLY+QC1

Diego De Panis2

ERGA Assembly2

ERGA2

Diego De Panis2

ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)1 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)1 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)1

Scaffolding2

Scaffolding2 Genome assembly18 Sequencing quality control17 Variant calling12 Sequence assembly8 Expression analysis7 Variant filtering7 Annotation6 Sequence clustering6 Taxonomic classification6 Sequence alignment5 De-novo assembly4 Genome annotation4 Calculation3 Conversion3 Copy number variation detection3 Data retrieval3 Gene-set enrichment analysis3 Haplotype mapping3 Modelling and simulation3 Protein interaction network analysis3 Transcriptome assembly3 Variant classification3 Visualisation3 Antimicrobial resistance prediction2 Correlation2 Data filtering2 Differential gene expression profiling2 Gene functional annotation2 Genetic mapping2 Genome visualisation2 Image analysis2 Indel detection2 Prediction and recognition2 Protein interaction network prediction2 Sequence assembly validation2 Sequence assembly visualisation2 Sequence read processing2 SNP annotation2 SNP detection2 Weighted correlation network analysis2 Binding site prediction1 Classification1 Clustering1 Contact map calculation1 Copy number estimation1 Data analysis1 Data handling1 Differential protein expression profiling1 Dimensionality reduction1 DNA barcoding1 Enrichment analysis1 Expression correlation analysis1 Feature extraction1 Format detection1 Gene expression profiling1 Genome alignment1 Genome analysis1 Genome comparison1 Global alignment1 ID mapping1 Information retrieval1 k-mer counting1 Local alignment1 Mapping1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Nucleic acid property calculation1 Operation1 Pairwise sequence alignment1 Peptide identification1 Phasing1 Phylogenetic inference1 Protein identification1 Protein-protein interaction analysis1 Read mapping1 Relation extraction1 RNA-Seq analysis1 Sequence alignment analysis (site correlation)1 Sequence annotation1 Sequence contamination filtering1 Sequence cutting1 Sequence distance matrix generation1 Sequence profile generation1 Sequence trimming1 Single particle analysis1 Standardisation and normalisation1 Statistical calculation1 Statistical modelling1 Structural variation detection1 Structure-based sequence alignment1 Text annotation1 Text mining1 Transcription factor binding site prediction1 Validation1 More...

Work-in-progress1 Stable1