Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Shell Script1
Tag
BROAD1
DNA1
DNA-seq1
GATK41
genome1
Genomics1
Germline1
HaplotyeCaller1
INDELs1
SNPs1
variant_calling1
WGS1
More...
Submitter
Tracy Chew1
Georgina Samaha4
Tom Brown4
Diego De Panis3
Martin Beracochea1
Samuel Lambert1
Oliver White1
Michael Lloyd1
Usman Rashid1
Sebastian Röner1
More...
Space
Australian BioCommons1
Creator
Tracy Chew4
Topic annotations
Genomics1
Whole genome sequencing4
Genetic variation3
Transcriptomics3
Gene transcripts2
Sequence assembly2
Bioinformatics1
Biomedical science1
DNA mutation1
DNA packaging1
DNA polymorphism1
Gene expression1
Metagenomic sequencing1
Metagenomics1
Population genomics1
More...
Operation annotations
Genomics1
Maturity
Work-in-progress1
1
Workflow matching the given criteria:
(Clear all filters)
Submitter:
Tracy Chew1
Topic annotations:
Genomics1
Work-in-progress
Germline-ShortV @ NCI-Gadi is an implementation of the BROAD Institute's best practice workflow for germline short variant discovery. This implementation is optimised for the National Compute Infrastucture's Gadi HPC, utilising scatter-gather parallelism to enable use of multiple nodes with high CPU or memory efficiency. This workflow requires sample BAM files, which can be generated using the Fastq-to-bam @ NCI-Gadi pipeline. Germline-ShortV can be applied ...
Type: Shell Script
Creators: Rosemarie Sadsad, Georgina Samaha, Tracy Chew, Cali Willet
Submitter: Tracy Chew
Download
