Workflows
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Tool
seqtk2
MultiQC21
SAMtools16
fastp11
gfastats9
BEDTools7
Bowtie 27
BUSCO7
Cutadapt7
BWA6
lofreq6
Minimap26
compleasm5
ggplot25
MACS5
snpEff5
Bandage4
BCFtools4
GenomeScope 2.04
kraken24
Merqury4
QualiMap4
FastQC3
FASTX-Toolkit3
gffread3
Gromacs3
Open Babel3
taxonomy_krona_chart3
ToolDistillator3
AmberTools2
BamTools2
biomformat2
bx-python2
Cufflinks2
iVar2
JBrowse2
MAPseq2
MaxQuant2
Medaka2
PRINSEQ2
purge_dups2
QUAST2
RDKit2
STAR2
StringTie2
Trimmomatic2
Workflow4Metabolomics2
xcms2
ABRicate1
ampvis1
anndata1
Bakta1
Binette1
BLAST1
Bracken1
Bwa-mem21
CheckM1
ChemicalToolbox1
Clair31
Clustal 2 (Clustal W, Clustal X)1
cmsearch-deoverlap1
CONCOCT1
CoverM1
dastool1
DeepTools1
DESeq21
dRep1
edgeR1
eggNOG-mapper v21
FastTree1
FEELnc1
Flye1
FreeBayes1
GOseq1
GTDB-Tk1
Helixer1
Infernal1
Integron Finder1
InterProScan (EBI)1
iqtree1
ISEScan1
KrakenTools1
MAFFT1
MAKER1
MaxBin1
MEGAHIT1
Meryl1
MetaBAT 21
MetaNovo1
metaspades1
MFAssignR1
msConvert1
MSstats1
NanoPlot1
Newick Utilities1
OMArk1
PlasmidFinder1
Recentrifuge1
SCANPY1
SemiBin1
SeqCode1
shovill1
snipit1
SRA Software Toolkit1
SuCOS1
Unipept1
UniProt1
VAPOR1
Vcflib1
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Workflow type
Galaxy2
Tests
All failing1
2
Workflows matching the given criteria:
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Tool:
seqtk2
Submitter:
WorkflowHub Bot2
This workflow generates Hi-C contact maps for genome assemblies in the Pretext format. It is compatible with one or 2 haplotypes. It includes tracks for PacBio read coverage, Gaps, and telomeres. The Pretext files can be open in PretextView for the manual curation of genome assemblies.
This workflow performs subtyping and consensus sequence generation for batches of Illumina PE sequenced Influenza A isolates.