Workflows

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3 Workflows matching the given criteria: (Clear all filters)

Tool:

mgnify-amplicon-pipeline-v5-rrna-prediction/main

Intergalactic Workflow Commission (IWC)

Tests Passing

Classification and visualization of SSU, LSU sequences.

Type: Galaxy

Creators: Rand Zoabi, Paul Zierep, EMBL's European Bioinformatics Institute

Submitter: WorkflowHub Bot

Created: 4th Feb 2025 at 03:01

GERONIMO

Mendel Centre for Plant Genomics and Proteomics

GERONIMO

Introduction

GERONIMO is a bioinformatics pipeline designed to conduct high-throughput homology searches of structural genes using covariance models. These models are based on the alignment of sequences and the consensus of secondary structures. The pipeline is built using Snakemake, a workflow management tool that allows for the reproducible execution of analyses on various computational platforms.

The idea for developing GERONIMO emerged from a comprehensive search for [telomerase ...

Type: Snakemake

Creator: Agata Kilar

Submitter: Agata Kilar

DOI: 10.48546/workflowhub.workflow.547.1

Created: 1st Aug 2023 at 02:34, Last updated: 3rd Aug 2023 at 19:15

MGnify raw reads taxonomic profiling pipeline

MGnify

Stable

The containerised pipeline for profiling shotgun metagenomic data is derived from the MGnify pipeline raw-reads analyses, a well-established resource used for analyzing microbiome data. Key components:

Quality control and decontamination
rRNA and ncRNA detection using Rfam database
Taxonomic classification of SSU and LSU regions
Abundance analysis with mOTUs

Type: Nextflow

Creators: Ekaterina Sakharova, Martin Beracochea

Submitter: Ekaterina Sakharova

Created: 30th Mar 2023 at 21:49, Last updated: 4th Apr 2023 at 16:20

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GERONIMO

Introduction

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