TSSr1 MultiQC37 fastp32 SAMtools32 BUSCO24 BWA21 Minimap221 FastQC17 gfastats15 BEDTools14 Bowtie 213 Merqury13 BLAST12 Cutadapt11 kraken211 Bandage10 BCFtools10 Bwa-mem29 SRA Software Toolkit9 GenomeScope 2.08 QUAST8 taxonomy_krona_chart8 lofreq7 MaBoSS7 MACS7 PhysiCell7 SCANPY7 Galaxy6 gffread6 ggplot26 purge_dups6 seqtk6 shovill6 StringTie6 FASTX-Toolkit5 Flye5 Konstanz Information Miner (KNIME)5 QualiMap5 R5 snpEff5 Stacks5 STAR5 TransDecoder5 Trimmomatic5 UniProt5 antiSMASH4 Cufflinks4 NanoPlot4 Open Babel4 Racon4 RepeatMasker4 Seurat4 SPAdes4 Unicycler4 anndata3 Biopython3 bx-python3 cisTEM3 DESeq23 Gromacs3 HISAT23 Infernal3 iqtree3 iVar3 MAPseq3 Medaka3 MotionCor23 Nextflow3 picard_samtofastq3 PretextView3 RDKit3 Scipion3 ToolDistillator3 Vcflib3 Variant Effect Predictor (VEP)3 ABRicate2 AmberTools2 BamTools2 BBMap2 BioContainers2 biomformat2 Bracken2 BRAKER12 CellProfiler2 CheckM2 ChiRA2 CNVkit2 Diamond2 FreeBayes2 funannotate2 GATK2 HiCExplorer2 JBrowse2 KrakenTools2 MAFFT2 MaxBin2 MaxQuant2 MetaBAT 22 nanopolish2 NCBI Datasets2 NGSUtils2 OMArk2 Picard2 PredPrIn2 PRINSEQ2 RepeatModeler2 RSeQC2 SemiBin2 seqkit2 Smudgeplots2 Snakemake2 SnpSift2 tophat22 VADR2 vardict2 VarScan2 vcfanno2 vcfutils2 VSEARCH2 XMIPP2 YaHS2 AdapterRemoval1 AGAT1 ampvis1 AnnotSV1 Bakta1 Binette1 Bioconductor1 BlobToolKit1 CARNIVAL1 cBioPortal1 ChemicalToolbox1 Clair31 Clustal 2 (Clustal W, Clustal X)1 Clustal 1.8 (Clustal W, Clustal X)1 clusterProfiler1 cmsearch-deoverlap1 COMBAT-TB Workbench1 compute_sequence_length1 CONCOCT1 CoverM1 cuffdiff1 dastool1 decoupleR1 DeepTools1 DeepVariant1 Delly21 dRep1 edgeR1 EGA1 eggNOG-mapper v21 EMBOSS1 FastTree1 FEELnc1 FGENESH1 Filtlong1 FLASH1 Foldseek1 GADES1 Galaxy Image Analysis1 gblocks1 GBMatch - GBMPredictor1 GEMINI1 GetOrganelle1 ggtree1 GOseq1 GSEA1 GTDB-Tk1 hAMRonization1 Helixer1 HiFiAdapterFilt1 Hifiasm1 htseqcount1 HTSlib1 ImageJ21 Integron Finder1 InterProScan (EBI)1 ISEScan1 JBrowse 21 MAKER1 Mash1 Matchms1 MEGAHIT1 Meryl1 MetaNovo1 metaspades1 MFAssignR1 miniasm1 miniprot1 MitoHiFi1 MITOS1 MOB-suite1 MolMeDB1 Metagenomic operational taxonomic units (mOTUs)1 msConvert1 MSMetaEnhancer1 MSstats1 MUMmer1 Newick Utilities1 ngsReports1 OBITools1 PEAR1 PhysiBoSS1 pilon1 PlasmidFinder1 PLINK1 Prodigal1 progeny1 Proteinortho1 protexcluder1 pyfastaq1 qcxms1 Recentrifuge1 recetox-msfinder1 RepeatModeler1 scikit-image1 SeqCode1 SeqSero21 SISTR1 snipit1 snippy1 staramr1 Subread1 SuCOS1 tabix1 TaxonKit1 tb-profiler1 Trim Galore1 UCSC Genome Browser Utilities1 Unipept1 VAPOR1 varlociraptor1 WGCNA1 xtb1 More...

Common Workflow Language1

Bioinformatics1 cage1 cage-seq1 cageseq-data1 genome-annotation1 GTF1 Transcription Start Sites1 More...

Sora Yonezawa1

bonohulab1

Hiroshima workflow community1

Sora Yonezawa1 Ryo Nozu1

Functional genomics1 Transcriptomics1

Genome annotation1