Workflows

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440 Workflows visible to you, out of a total of 541
QC + Mapping + Counting (single+paired) - Ref Based RNA Seq - Transcriptomics - GTN

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

Thanks to...

Workflow Author(s): Bérénice Batut, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

QC + Mapping + Counting - Ref Based RNA Seq - Transcriptomics - GTN - subworkflows

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

WF3_VERIFICATION_WORKFLOW

WF3- Peptide verification/validaiton workflow

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 3: Verification, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

WF5_Data_Interpretation_Worklow

Interpreting MaxQuant data using MSstats involves applying a rigorous statistical framework to glean meaningful insights from quantitative proteomic datasets

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 5: Data Interpretation, available in the GTN

Thanks to...

Workflow Author(s): ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

WF1_Database_Generation_Workflow

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteiomics 1: Database-Generation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): [Subina ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

WF2_Discovery-Workflow

Discovery workflow with SG/PS and MaxQuant to generate microbial peptides

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 2: Discovery, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

WF4_Quantitation_Workflow

Quantification using the MaxQuant tool

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 4: Quantitation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

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