Seven Bridges Open Workflows
OverviewOpen Source workflows maintained or curated by Seven Bridges in Common Workflow Language for a variety of genomics applications.
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SEEK ID: https://dev.workflowhub.eu/projects/6
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Team created: 24th Mar 2020
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Teams: Seven Bridges Open Workflows
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https://orcid.org/0000-0003-2933-1260
I have a computer science background and I work in bioinformatics. I am interested in structural variant calling.
BROAD Best Practices Somatic CNV Panel is used for creating a panel of normals (PON) given a set of normal samples.
Common Use Cases
For CNV discovery, the PON is created by running the initial coverage collection tools individually on a set of normal samples and combining the resulting copy ratio data using a dedicated PON creation tool [1]. This produces a binary file that can be used as a PON. It is very important to use normal samples that are as technically similar as possible to the ...
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