Peptide And Protein ID Tutorial 5
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Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input: Protein Database | Input: Protein Database | n/a |
|
| Input: mzML file | Input: mzML file | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | PeakPickerHiRes | PeakPickerHiRes |
| 3 | FileConverter | FileConverter |
| 4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0 |
| 5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 |
| 6 | Select | Output: all identified contaminants. Grep1 |
| 7 | Select | Output: all identified proteins without common contaminants. CAVE: some proteins may be both! Grep1 |
| 8 | Select | Output: only those non-contaminant proteins not evaluated to be "Doubtful". Grep1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
| _anonymous_output_6 | _anonymous_output_6 | n/a |
|
| _anonymous_output_7 | _anonymous_output_7 | n/a |
|
| _anonymous_output_8 | _anonymous_output_8 | n/a |
|
| _anonymous_output_9 | _anonymous_output_9 | n/a |
|
| _anonymous_output_10 | _anonymous_output_10 | n/a |
|
Version History
5 (earliest) Created 22nd Apr 2024 at 11:22 by Helena Rasche
Added/updated 3 files
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masterefb5cea
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Views: 582 Downloads: 119
Created: 22nd Apr 2024 at 11:22
Last updated: 22nd Apr 2024 at 11:22
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