General
Web page: Not specified
Funding details: Related items
Teams: MGnify, nf-core, Workflow Hub Administration, Galaxy COVID-19, Testing, Defragmentation training school
Organizations: University of Manchester, Working from Home
Teams: Testing
Organizations: Swiss Institute of Bioinformatics
https://orcid.org/0000-0003-1361-7301
Teams: Defragmentation training school
Organizations: University of Muenster
https://orcid.org/0000-0003-4906-6724
Teams: Australian BioCommons Dev, Testing team
Organizations: SAM
https://orcid.org/0000-0001-6665-3395
Teams: Submission Tutorial
Organizations: University of Edinburgh
The images are two time points of a time lapse experiment where the INCENP gene was subjected to siRNA knock-down. The data are taken from the published mitocheck screen. In this screen the authors carried out a genome-wide phenotypic profiling of each of the ~21,000 human protein-coding genes by two-day live imaging of fluorescently labelled chromosomes.
Creator: yi.sun@embl.de
Submitter: yi.sun@embl.de
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Creator: Finn Bacall
Submitter: Finn Bacall
Abstract (Expand)
Authors: D. Holtig, G. Reiner
Date Published: 2nd Mar 2022
Publication Type: Journal
Abstract
Authors: E. Rohmann, M. Wellenbrock, S. Hoffmann
Date Published: 1st Sep 1979
Publication Type: Journal
Abstract (Expand)
Authors: M. R. Keighley, P. Asquith, J. A. Edwards, J. Alexander-Williams
Date Published: 1st Oct 1975
Publication Type: Journal
Abstract
Authors: Newcomer M, Hubbard S
Date Published: No date defined
Publication Type: Journal
Abstract
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Date Published: No date defined
Publication Type: Journal
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Creator: Finn Bacall
Submitter: Finn Bacall
This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Helixer, available ...
Associated Tutorial
This workflows is part of the tutorial Filter, plot, and explore single cell RNA-seq data with Seurat, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): ...
This workflow is developed for automatic detection and measuring of mitoflashes in time-lapse microscopy images.
In addition, this workflow can be used for detection and tracking of other spot-like organelles with small motion.
If this workflow helped with the analysis of your data, please do not forget to cite: https://doi.org/10.1097/j.pain.0000000000002642
Associated Tutorial
This workflows is part of the tutorial [Tracking of mitochondria and capturing ...
Associated Tutorial
This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
Tutorial Author(s): ...
Associated Tutorial
This workflows is part of the tutorial Introduction to Image Analysis using Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
**Tutorial ...
