Workflows

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Helixer, available ...

Associated Tutorial

This workflows is part of the tutorial Filter, plot, and explore single cell RNA-seq data with Seurat, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): ...

This workflow is developed for automatic detection and measuring of mitoflashes in time-lapse microscopy images.

In addition, this workflow can be used for detection and tracking of other spot-like organelles with small motion.

If this workflow helped with the analysis of your data, please do not forget to cite: https://doi.org/10.1097/j.pain.0000000000002642

Associated Tutorial

This workflows is part of the tutorial [Tracking of mitochondria and capturing ...

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

Tutorial Author(s): ...

Associated Tutorial

This workflows is part of the tutorial Introduction to Image Analysis using Galaxy, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

**Tutorial ...

Analyse HeLa fluorescence siRNA screen

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses ...

Deep Learning image classifier model

Associated Tutorial

This workflows is part of the tutorial Train and Test a Deep learning image classifier with Galaxy-Ludwig, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

**Workflow ...