Workflow constructed from Tutorial 'Introduction to image analysis using Galaxy'

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Workflow constructed from Tutorial 'Introduction to image analysis using Galaxy', available in the GTN

Features

Thanks to...

Tutorial Author(s): Thomas Wollmann, Saskia Hiltemann, Leonid Kostrykin

Workflow Author(s): Till Korten

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1258?version=2

Inputs

ID Name Description Type
input_image #main/input_image n/a
  • File

Steps

ID Name Description
1 Histogram equalization toolshed.g2.bx.psu.edu/repos/imgteam/2d_histogram_equalization/ip_histogram_equalization/0.0.1
2 Image Info toolshed.g2.bx.psu.edu/repos/imgteam/image_info/ip_imageinfo/0.2
3 Filter Image toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/0.0.3
4 Filter Image toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/0.0.3
5 Convert image toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/6.7.0+galaxy1
6 Convert image toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/6.7.0+galaxy1
7 Auto Threshold toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.0.5
8 Histogram equalization toolshed.g2.bx.psu.edu/repos/imgteam/2d_histogram_equalization/ip_histogram_equalization/0.0.1
9 Binary 2 Label toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.4
10 Convert image toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/6.7.0+galaxy1
11 Overlay Images toolshed.g2.bx.psu.edu/repos/imgteam/overlay_images/ip_overlay_images/0.0.3
12 Convert image toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/6.7.0+galaxy1
13 Count Objects toolshed.g2.bx.psu.edu/repos/imgteam/count_objects/ip_count_objects/0.0.5

Outputs

ID Name Description Type
out #main/out n/a
  • File
output #main/output n/a
  • File

Version History

5.0 (latest) Created 16th Jul 2024 at 14:10 by Helena Rasche

Added/updated 4 files


Open master 79d5ec0

8.0 (earliest) Created 25th Jun 2024 at 11:16 by Helena Rasche

Added/updated 4 files


Frozen 8.0 3f681ea
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
Galaxy Image Analysis
scikit-image
License
MIT License
Activity

Views: 194   Downloads: 88

Created: 25th Jun 2024 at 11:16

Last updated: 25th Jun 2024 at 11:16

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Total size: 81.6 KB
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