feature_extraction

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

Tutorial Author(s): Thomas Wollmann, Leonid Kostrykin

Funder(s): ELIXIR Europe

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1270?version=3

Steps

ID Name Description
2 Filter 2-D image toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/1.12.0+galaxy1
3 Threshold image toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.18.1+galaxy3
4 Convert binary image to label map toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.5+galaxy0
5 Extract image features toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0
6 Filter label map by rules toolshed.g2.bx.psu.edu/repos/imgteam/2d_filter_segmentation_by_features/ip_2d_filter_segmentation_by_features/0.0.1-4
7 Extract image features toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0

Version History

6.0 (latest) Created 11th Nov 2024 at 13:23 by Helena Rasche

Added/updated 4 files


Open master 1724778

5.0 Created 16th Jul 2024 at 14:10 by Helena Rasche

Added/updated 4 files


Frozen 5.0 30d9bf0

7.0 (earliest) Created 25th Jun 2024 at 11:17 by Helena Rasche

Added/updated 4 files


Frozen 7.0 38fda74
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
scikit-image
Galaxy Image Analysis
License
MIT License
Activity

Views: 678   Downloads: 197

Created: 25th Jun 2024 at 11:17

Last updated: 11th Nov 2024 at 13:23

help Attributions

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Total size: 77.7 KB
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