Taxonomy Profiling and Visualization with Krona
2.0

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Workflow Type: Galaxy

Microbiome - Taxonomy Profiling

Associated Tutorial

This workflows is part of the tutorial Taxonomy Profiling and Visualization with Krona, available in the GTN

Tutorial Author(s): Bérénice Batut, Engy Nasr, Paul Zierep

Tutorial Contributor(s): Hans-Rudolf Hotz, Wolfgang Maier

Workflow Author(s): Engy Nasr, Bérénice Batut, Paul Zierep

Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EOSC-Life

SEEK ID: https://dev.workflowhub.eu/workflows/1073?version=1

ID	Name	Description	Type
collection_of_preprocessed_samples	#main/collection_of_preprocessed_samples	Output collection from the Nanopore Preprocessing workflow	array containing File
kraken_database	#main/kraken_database	kraken_database_for_user_to_choose	string

ID	Name	Description
2	Kraken2	toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1
3	Krakentools: Convert kraken report file	toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy1
4	Krona pie chart	toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0

ID	Name	Description	Type
converted_kraken_report	#main/converted_kraken_report	n/a	File
kraken2_with_pluspf_database_output	#main/kraken2_with_pluspf_database_output	n/a	File
kraken2_with_pluspf_database_output_report	#main/kraken2_with_pluspf_database_output_report	n/a	File
krona_pie_chart	#main/krona_pie_chart	n/a	File