Workflow Type: Galaxy
Open
Frozen
Making sense of a newly assembled genome
Associated Tutorial
This workflows is part of the tutorial Ecoli Comparison, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Delphine Lariviere, Helena Rasche
Steps
ID | Name | Description |
---|---|---|
10 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
11 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
12 | Add column | toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 |
13 | LASTZ | toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2 |
14 | random_lines1 | random_lines1 |
15 | Filter | Filter1 |
16 | Search in textfiles | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 |
17 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 |
18 | Cut | Cut1 |
19 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
20 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
21 | Compute sequence length | toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length/1.0.1 |
22 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
23 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1 |
24 | Select | Grep1 |
25 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
26 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
27 | Cut | Cut1 |
28 | Cut | Cut1 |
29 | Concatenate datasets | cat1 |
30 | SortBED | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0 |
31 | ComplementBed | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_complementbed/2.27.0.0 |
32 | Filter | Filter1 |
33 | Filter | Filter1 |
34 | Intersect intervals | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.2 |
35 | Join two Datasets | join1 |
5 | Filter sequences by length | toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1 |
6 | LASTZ | toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2 |
7 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
8 | Select | Grep1 |
9 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
Version History
3.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche
Added/updated 4 files
Open
master
5dfd287
6.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche
Added/updated 4 files
Frozen
6.0
6da53ad
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Views: 207 Downloads: 85
Created: 25th Jun 2024 at 10:58
Last updated: 25th Jun 2024 at 10:58
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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