Workflow Type: Galaxy
Open
De Bruijn Graph Assembly
Associated Tutorial
This workflows is part of the tutorial Debruijn Graph, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Simon Gladman, Helena Rasche, Saskia Hiltemann
Inputs
ID | Name | Description | Type |
---|---|---|---|
mutant_R1 | mutant_R1 | n/a |
|
mutant_R2 | mutant_R2 | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | VelvetOptimiser | toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 |
3 | SPAdes | toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 |
4 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
5 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
fasta_stats_velvet | fasta_stats_velvet | n/a |
|
fasta_stats_spades | fasta_stats_spades | n/a |
|
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:00 by Helena Rasche
Added/updated 4 files
Open
master
d6f1f40
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Activity
Views: 137 Downloads: 52
Created: 25th Jun 2024 at 11:00
Last updated: 25th Jun 2024 at 11:00
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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