Genome Assembly Quality Control
1.0

Workflow Type: Galaxy

Genome assembly quality control using PacBio data and with reference genome

Associated Tutorial

This workflows is part of the tutorial Genome Assembly Quality Control, available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Laura Leroi, Stéphanie Robin

Workflow Author(s): Erwan Corre, Stéphanie Robin, Anthony Bretaudeau, Alexandre Cormier, Laura Leroi

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
GCA_000146045.2_genomic.fna GCA_000146045.2_genomic.fna n/a
  • File
SRR13577847_subreads.30x.fastq.gz SRR13577847_subreads.30x.fastq.gz n/a
  • File
Scerevisiae-INSC1019.flye.30x.fa Scerevisiae-INSC1019.flye.30x.fa n/a
  • File
Scerevisiae-INSC1019.hifiasm.30x.fa Scerevisiae-INSC1019.hifiasm.30x.fa n/a
  • File

Steps

ID Name Description
4 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
5 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
6 Quast toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0
7 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
8 Chromeister toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1
9 Meryl toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6
10 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
11 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
12 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:01 by Helena Rasche

Added/updated 4 files


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Views: 397   Downloads: 111

Created: 25th Jun 2024 at 11:00

Last updated: 25th Jun 2024 at 11:01

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