Workflow Type: Galaxy
Open
Genome assembly quality control using PacBio data and with reference genome
Associated Tutorial
This workflows is part of the tutorial Genome Assembly Quality Control, available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Laura Leroi, Stéphanie Robin
Workflow Author(s): Erwan Corre, Stéphanie Robin, Anthony Bretaudeau, Alexandre Cormier, Laura Leroi
Inputs
ID | Name | Description | Type |
---|---|---|---|
GCA_000146045.2_genomic.fna | GCA_000146045.2_genomic.fna | n/a |
|
SRR13577847_subreads.30x.fastq.gz | SRR13577847_subreads.30x.fastq.gz | n/a |
|
Scerevisiae-INSC1019.flye.30x.fa | Scerevisiae-INSC1019.flye.30x.fa | n/a |
|
Scerevisiae-INSC1019.hifiasm.30x.fa | Scerevisiae-INSC1019.hifiasm.30x.fa | n/a |
|
Steps
ID | Name | Description |
---|---|---|
4 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
5 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
6 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0 |
7 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
8 | Chromeister | toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1 |
9 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
10 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
11 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
12 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
Version History
1.0 (earliest) Created 25th Jun 2024 at 11:01 by Helena Rasche
Added/updated 4 files
Open
master
7188779
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
Not specifiedSubmitter
Discussion Channel
Activity
Views: 128 Downloads: 45
Created: 25th Jun 2024 at 11:00
Last updated: 25th Jun 2024 at 11:01
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
None