Genome Assembly Quality Control
1.0

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Workflow Type: Galaxy

Genome assembly quality control using PacBio data and with reference genome

Associated Tutorial

This workflows is part of the tutorial Genome Assembly Quality Control, available in the GTN

Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Laura Leroi, Stéphanie Robin

Workflow Author(s): Erwan Corre, Stéphanie Robin, Anthony Bretaudeau, Alexandre Cormier, Laura Leroi

SEEK ID: https://dev.workflowhub.eu/workflows/1128?version=1

ID	Name	Description	Type
GCA_000146045.2_genomic.fna	GCA_000146045.2_genomic.fna	n/a	File
SRR13577847_subreads.30x.fastq.gz	SRR13577847_subreads.30x.fastq.gz	n/a	File
Scerevisiae-INSC1019.flye.30x.fa	Scerevisiae-INSC1019.flye.30x.fa	n/a	File
Scerevisiae-INSC1019.hifiasm.30x.fa	Scerevisiae-INSC1019.hifiasm.30x.fa	n/a	File

ID	Name	Description
4	Busco	toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
5	Busco	toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
6	Quast	toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0
7	Busco	toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
8	Chromeister	toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1
9	Meryl	toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6
10	Merqury	toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
11	Merqury	toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
12	Merqury	toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2