Workflow Type: Galaxy
Open
Frozen
Genome Assembly of MRSA using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of MRSA using Illumina MiSeq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Bazante Sanders, Bérénice Batut
Tutorial Contributor(s): Helena Rasche, Bazante Sanders, Saskia Hiltemann, Miaomiao Zhou
Workflow Author(s): Bazante Sanders, Bérénice Batut
Funder(s): Avans Hogeschool, ABRomics
Inputs
ID | Name | Description | Type |
---|---|---|---|
DRR187559_1 | DRR187559_1 | n/a |
|
DRR187559_2 | DRR187559_2 | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
3 | fastp | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 |
4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
5 | Shovill | toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy2 |
6 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 |
7 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
8 | Bandage Info | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/2022.09+galaxy2 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
fastp_json | fastp_json | n/a |
|
shovill_log | shovill_log | n/a |
|
quast_output | quast_output | n/a |
|
bandage_info_output | bandage_info_output | n/a |
|
Version History
2.0 (latest) Created 16th Jul 2024 at 14:09 by Helena Rasche
Added/updated 4 files
Open
master
2f900f6
7.0 (earliest) Created 25th Jun 2024 at 11:02 by Helena Rasche
Added/updated 4 files
Frozen
7.0
8a9a5f6
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
Not specifiedSubmitter
Discussion Channel
License
Activity
Views: 199 Downloads: 79
Created: 25th Jun 2024 at 11:02
Last updated: 25th Jun 2024 at 11:02
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
None