Peptide And Protein ID Tutorial
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Workflow Type: Galaxy

Peptide and Protein ID using SearchGUI and PeptideShaker

Associated Tutorial

This workflows is part of the tutorial Peptide And Protein ID Tutorial, available in the GTN

Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning

SEEK ID: https://dev.workflowhub.eu/workflows/1172?version=2

ID	Name	Description	Type
Input: Protein Database	Input: Protein Database	n/a	File
Input: mzML file	Input: mzML file	n/a	File

ID	Name	Description
2	PeakPickerHiRes	PeakPickerHiRes
3	FileConverter	FileConverter
4	Search GUI	toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0
5	Peptide Shaker	toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0
6	Select	Output: all identified contaminants. Grep1
7	Select	Output: all identified proteins without common contaminants. CAVE: some proteins may be both! Grep1
8	Select	Output: only those non-contaminant proteins not evaluated to be "Doubtful". Grep1

ID	Name	Description	Type
_anonymous_output_3	_anonymous_output_3	n/a	File
_anonymous_output_4	_anonymous_output_4	n/a	File
_anonymous_output_5	_anonymous_output_5	n/a	File
_anonymous_output_6	_anonymous_output_6	n/a	File
_anonymous_output_7	_anonymous_output_7	n/a	File
_anonymous_output_8	_anonymous_output_8	n/a	File
_anonymous_output_9	_anonymous_output_9	n/a	File
_anonymous_output_10	_anonymous_output_10	n/a	File

Added/updated 4 files

Open master 4e0e0ad

Added/updated 4 files

Frozen 5.0 d9f70d5

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Created: 25th Jun 2024 at 11:06

Last updated: 25th Jun 2024 at 11:06