Peptide And Protein ID Via OMS Using Two Search Engines 4.0
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Download RO-CratePeptide and Protein ID using OpenMS tools
Associated Tutorial
This workflows is part of the tutorial Peptide And Protein ID Via OMS Using Two Search Engines, available in the GTN
Thanks to...
Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Human_database_including_decoys | #main/Human_database_including_decoys | n/a |
|
| mzML_test_dataset | #main/mzML_test_dataset | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | XTandemAdapter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.2.0.1 |
| 3 | MSGFPlusAdapter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.2.0 |
| 4 | IDPosteriorErrorProbability | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0 |
| 5 | IDPosteriorErrorProbability | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0 |
| 6 | IDMerger | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.2.0 |
| 7 | ConsensusID | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_consensusid/ConsensusID/2.2.0 |
| 8 | PeptideIndexer | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.2.0 |
| 9 | FalseDiscoveryRate | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0 |
| 10 | IDScoreSwitcher | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.2.0 |
| 11 | FileInfo | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0 |
| 12 | FidoAdapter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1 |
| 13 | FalseDiscoveryRate | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0 |
| 14 | IDFilter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.2.0 |
| 15 | FileInfo | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche
Added/updated 4 files
Open
master2e2b48f
Creators and Submitter
Views: 294 Downloads: 71
Created: 25th Jun 2024 at 11:08
Last updated: 25th Jun 2024 at 11:08
Tags AttributionsNone
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